New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2301454	0 (0.000)	82 (1.230)	60/270	0.1	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

GGCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2301305‑2301454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  NC_002947/5545321‑5545468                                                                                                                                                                                                                                                                                                             GGCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGC                                                                                                                                                        >  1:162771/1‑149  GCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGC                                                                                                                                                        <  1:94765/148‑1     GTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTC                                                                                                                                                     >  7:33217/1‑148        CAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATC                                                                                                                                                 <  3:152218/149‑1           GCTTGGGACCAGGTGCAAGTCGTAGGTATGAAACAGACGCATGGATGACCTGTTTGTGTCTAGTCGGTCAAGCGGGGATAGTGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCTATCGCGGGCAAGCCAGCTTCTATCAAA                                                                                                                                              <  5:223608/149‑1             TTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAAC                                                                                                                                             >  5:27357/1‑148                 GCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAG                                                                                                                                        <  1:86721/149‑1                 GCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAA                                                                                                                                           >  2:227786/1‑146                  CCCAGGTGCCAGTCGGAGGTATGAAACAGGCGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATAGCGGGCAAGCCAGCTTCTATCAAACAAAAG                                                                                                                                        >  5:62349/1‑148                   CCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGAT                                                                                                                                      <  4:264163/149‑1                   CCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGA                                                                                                                                       >  3:264163/1‑148                   CCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAA                                                                                                                                              >  2:80992/1‑141                   CCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAA                                                                                                                                              <  1:80992/141‑1                         GCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGTTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGAAAGCGTGCAAGCCAGCTTCTATCAATCAAAAGATAACCC                                                                                                                                 >  3:240988/1‑148                         GCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAA                                                                                                                                          <  3:23209/139‑1                         GCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAA                                                                                                                                          >  4:23209/1‑139                                 GAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTT                                                                                                                        >  1:100809/1‑149                                      ATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAA                                                                                                                                    >  7:39607/1‑132                                      ATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAA                                                                                                                                    <  8:39607/132‑1                                       TGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGAGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGC                                                                                                                  >  6:95331/1‑149                                             gttctCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAA                                                                                                            <  3:6691/144‑1                                               ACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAA                                                                                                          >  1:139493/1‑149                                                 GCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACA                                                                                                        <  6:27357/149‑1                                                 GCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAA                                                                                                                                         >  8:225614/1‑116                                                 GCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAA                                                                                                                                         <  7:225614/116‑1                                                 GCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCT                                                                                                                                                    <  6:371226/105‑1                                                 GCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCT                                                                                                                                                    >  5:371226/1‑105                                                   ATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAtg                                                                                                      <  1:227786/149‑3                                                   ATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGG                                                                                                      <  5:95331/149‑1                                                   ATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCAACAGTTCTTTCTAGAGAAAAA                                                                                                            >  4:6691/1‑143                                                       ATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CG                                                                                                 >  4:260039/1‑149                                                            CTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGTCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTA                                                                                                                    <  7:242939/126‑1                                                                 GGTTTCGAGTCGTGCAAGCGGGGTAAGTGAGGTATTGTAACCCAAGCGTGCGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGTGTCAA                                                                                        <  5:321082/148‑1                                                                    GTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAG                                                                                                       >  7:256341/1‑131                                                                    GTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAG                                                                                                       <  8:256341/131‑1                                                                       GAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGC                                                                                 >  4:367422/1‑149                                                                       GAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAAC                                                                                                                                             <  7:297144/90‑1                                                                       GAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAAC                                                                                                                                             >  8:297144/1‑90                                                                          TCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAA                                                                              <  2:162771/149‑1                                                                            GGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGG                                                                                  <  1:378364/143‑1                                                                            GGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGG                                                                                  >  2:378364/1‑143                                                                            GGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGA                                                                                                                                       <  2:31267/91‑1                                                                               CAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTT                                                                         <  3:260039/149‑1                                                                                    GGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTC                                                                    >  2:110842/1‑149                                                                                    GGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTT                                                                         >  6:386999/1‑144                                                                                    GGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTT                                                                         <  5:386999/144‑1                                                                                        AAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCT                                                                <  6:62349/149‑1                                                                                               GGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTG                                                         <  8:33217/149‑1                                                                                                GTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGG                                                        >  2:20865/1‑149                                                                                                GTATGGTAACCAAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATAAGTGG                                                        >  5:254255/1‑149                                                                                                     GTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCA                                                     >  1:250102/1‑147                                                                                                          CCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAG                                              >  4:150468/1‑149                                                                                                          CCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAG                                              <  2:100809/149‑1                                                                                                              GCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGT                                          <  2:139493/149‑1                                                                                                               gatcGGGCCGCACAGCGGCCCGCTCGCGGGCAAGCAAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAACCAGGCG‑CGCGGGGTCAATGG                                                                                     >  7:255904/5‑105                                                                                                               CGTGTGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTG                                         <  6:254255/149‑1                                                                                                               CGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCCCCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGT                                          <  1:110842/149‑1                                                                                                                atcGGGCCGCACAGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGC                                        >  3:342116/4‑149                                                                                                                GTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCTTGCTGTGa                                        >  5:178283/1‑148                                                                                                                GTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGC                                        >  7:20566/1‑149                                                                                                                  GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCTTGCTGTGacc                                      <  6:178283/149‑4                                                                                                                        GCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGG                                <  3:385023/149‑1                                                                                                                         CTGTGCGGCCCGATCGCGGGGAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTCTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACCGGGA                               >  5:256606/1‑149                                                                                                                          acaGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCA                                                                       <  2:164/105‑1                                                                                                                          acaGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCA                                                                       >  1:164/4‑108                                                                                                                          TGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGG                                <  3:379569/147‑1                                                                                                                              CGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAAC                          >  6:312088/1‑149                                                                                                                              CGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAAC                          <  2:250102/149‑1                                                                                                                               GGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCTACAGGGATTAACG                         >  3:192025/1‑149                                                                                                                                   CGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGA                     >  5:123357/1‑149                                                                                                                                   CGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTA                            >  4:76481/1‑142                                                                                                                                   CGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTA                            <  3:76481/142‑1                                                                                                                                    GATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGAT                    <  1:20865/149‑1                                                                                                                                      TCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGC                  >  2:65205/1‑149                                                                                                                                      TCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGAT                              <  6:140841/137‑1                                                                                                                                      TCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGAT                              >  5:140841/1‑137                                                                                                                                      TCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGAAAGCTGTGCCGACAGGGATTAACGCCGATGC                  >  1:25991/1‑149                                                                                                                                        GCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCA                <  3:367422/149‑1                                                                                                                                         CGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCAT               >  5:300775/1‑149                                                                                                                                         CGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCATCTATACGTGGTCACAGCAAGCTGTGACGACAGGGATTAACGCCGATGCCAT               >  8:230631/1‑149                                                                                                                                             CAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG           <  3:150468/149‑1                                                                                                                                             CAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGG           <  8:20566/149‑1                                                                                                                                                ccgacCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCAAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGC         <  6:241694/143‑1                                                                                                                                                  CAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCAC      >  6:226644/1‑149                                                                                                                                                    GCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTC    <  1:219827/149‑1                                                                                                                                                     CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   <  1:391257/149‑1                                                                                                                                                     CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   >  1:376837/1‑149                                                                                                                                                     CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT   <  8:27229/149‑1                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  5:389126/1‑149                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGC         <  7:39792/142‑1                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGC         >  8:39792/1‑142                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGACCACTCTC  >  2:357998/1‑149                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACT                                                                     <  3:101004/82‑1                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACT                                                                     >  4:101004/1‑82                                                                                                                                                                                                                                                                                                             GGCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2301305‑2301454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCG‑CGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCTC  >  NC_002947/5545321‑5545468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.