New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652782	47 (0.700)	13 (0.230)	12/234	5.1	38.7%	coding (1961/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	= 4808159	1 (0.020)					intergenic (‑268/‑287)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
Rejected: Coverage evenness skew score above cutoff.

CATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCAC  >  NC_002947/652643‑652927                                                                                                                                             |                                                                                                                                                  cATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGa                                                                                                                                          <  7:352829/149‑1 (MQ=255)              cggcgCATGGCGGACTAGCGATGTGGAACGTGCCCGGCATTATTAAGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGTTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGc                                                                                                                             <  4:215258/149‑1 (MQ=25)               ggcgCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGcc                                                                                                                            >  4:73216/1‑149 (MQ=255)                  gcATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCgg                                                                                                                         <  3:73216/149‑1 (MQ=255)                   cATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGt                                                                                                                        >  6:324337/1‑149 (MQ=255)                     tGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTc                                                                                                                      <  2:70644/149‑1 (MQ=255)                      ggCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGtt                                                                                                                       >  2:65373/1‑147 (MQ=255)                       gCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCAGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCa                                                                                                                     <  8:307223/148‑1 (MQ=255)                            cTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCg                                                                                                                          >  4:89851/1‑138 (MQ=255)                            cTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCg                                                                                                                          <  3:89851/138‑1 (MQ=255)                            cTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCAc                                                                                                               >  2:334988/1‑149 (MQ=255)                                 gAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGccc                                                                                                          <  1:334988/149‑1 (MQ=255)                                      ggAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCt                                                                                                     >  8:91939/1‑149 (MQ=255)                                       gAACGTGCCCGGCATGATAACGGATGCGCAGCAATAATTGGCCAGAAACAAACCTAGCAGCCGCATTACCCGCGAACCGCCGCGCACG‑CGGACCTCGATCTCAGACCCTAAACGCTCACACAGCACGGATCAACTCAACGcacaagaa                                                                                                     >  8:320542/1‑144 (MQ=255)                                              cccGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                                                             <  3:142953/149‑1 (MQ=255)                                              cccGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCt                                                                                             <  8:217373/149‑1 (MQ=255)                                               ccGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGccc                                                                                                          <  3:200480/135‑1 (MQ=255)                                               ccGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGccc                                                                                                          >  4:200480/1‑135 (MQ=255)                                               ccGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTg                                                                                            <  7:91939/149‑1 (MQ=255)                                                   cATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCa                                                                                        <  3:346201/149‑1 (MQ=255)                                                       aTAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCt                                                                                    >  7:118386/1‑149 (MQ=255)                                                          aCGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt                                                                                  <  8:118386/148‑1 (MQ=255)                                                          aCGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt                                                                                  <  7:320542/148‑1 (MQ=255)                                                                  gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCt                                                                                                                                            >  8:210979/1‑82 (MQ=255)                                                                  gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCt                                                                                                                                            <  7:210979/82‑1 (MQ=255)                                                                  gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCAc                                                                                                               >  4:181981/1‑111 (MQ=255)                                                                  gcAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCAc                                                                                                               <  3:181981/111‑1 (MQ=255)                                                                         taatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGGACCGCCCGGtt                                                                                                                       >  8:196450/1‑96 (MQ=255)                                                                         taatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGGACCGCCCGGtt                                                                                                                       <  7:196450/96‑1 (MQ=255)                                                                            ttGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGACGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATg                                                                >  1:301674/1‑149 (MQ=255)                                                                                 ccGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTg                                                           >  2:163719/1‑148 (MQ=255)                                                                                       caaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCCACCTGTTTACGCCCCTCGCAAATGCGCTGCCGGttt                                                    >  8:73810/1‑148 (MQ=255)                                                                                         aacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTc                                                  >  7:281022/1‑149 (MQ=255)                                                                                               ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCAc                                             <  2:301674/148‑1 (MQ=255)                                                                                                      gTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCTGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCg                                     <  5:324337/149‑1 (MQ=255)                                                                                                      gTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGt                                        <  2:70614/146‑1 (MQ=255)                                                                                                      gTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGt                                        >  1:70614/1‑146 (MQ=255)                                                                                                       tttACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGt                                    <  7:73810/149‑1 (MQ=255)                                                                                                            ccGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAg                                         >  6:294487/1‑139 (MQ=255)                                                                                                            ccGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAg                                         <  5:294487/139‑1 (MQ=255)                                                                                                            ccGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTc                                      >  1:304527/1‑142 (MQ=255)                                                                                                            ccGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTc                                      <  2:304527/142‑1 (MQ=255)                                                                                                            ccGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATc                               >  1:123670/1‑149 (MQ=255)                                                                                                                         cgcgGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGt                  <  1:65373/149‑1 (MQ=255)                                                                                                                                     cTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATTCGCTGCAGGTTGTCTTCACCAAGTTCGTGAATCCGCTCGCTGTGGTCAAGAATCTCg       >  8:277552/1‑149 (MQ=255)                                                                                                                                     cTCGATCTCAGACCATGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCCCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCg       >  5:118379/1‑149 (MQ=255)                                                                                                                                          tctcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCAc  >  2:401367/1‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                  CATGAAAAACAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG‑CGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAATCTCGCTCAC  >  NC_002947/652643‑652927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.