| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4980585 | 1 (0.010) | 40 (0.600) +GGC |
36/268 | 1.3 | 97.6% | intergenic (‑24/+44) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947 | 4980586 = | 1 (0.010) | intergenic (‑25/+43) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE | |||||
TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > NC_002947/4980437‑4980727 | tgGGCCGAACACAGGTAGCGGCCGGGGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCTCTTCATTCGCGTGAACCTTCACATTCTTgg < 3:11218/149‑1 (MQ=255) aGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcg > 3:311752‑M1/1‑137 (MQ=255) gTGACCTGGCTTTGCCATTTATCGTTCGGGGCGGGCGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGTGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattaca < 4:311752‑M1/149‑25 (MQ=255) aGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacac > 6:363968‑M1/1‑119 (MQ=255) gCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGCCAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaggcc > 3:286819‑M1/1‑112 (MQ=255) aGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattaca > 6:70648‑M1/1‑103 (MQ=255) aGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattaca < 5:70648‑M1/127‑25 (MQ=255) cggggcggggGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcag < 6:172292‑M1/149‑51 (MQ=255) cggggcggggGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagacaatacaatcatcag > 7:383111‑M1/1‑99 (MQ=255) agAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatga < 6:6166‑M1/149‑76 (MQ=255) agcaccagcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgc > 7:295065‑M1/1‑68 (MQ=255) gcaccagcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgct > 7:336169‑M1/1‑67 (MQ=255) gcaAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagt < 8:336169‑M1/149‑89 (MQ=255) gggAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgggggcccaattacaaaaaccacagccaaaacaaacaacaggtcatctgaatgagggtgtgcatgatggtggtttgagtggaaa > 7:324010‑M1/1‑56 (MQ=255) ggCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttca < 1:96325‑M1/134‑87 (MQ=255) ggCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttca > 2:96325‑M1/1‑48 (MQ=255) gTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaaaacaatcatcaggtcatctgaatgatggtctgcatgatggtggtttcagtggaaatggtcttggcatt > 8:250480‑M1/1‑43 (MQ=255) cGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcc > 7:207145‑M1/1‑39 (MQ=255) gACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggaccaaattacaaacaccaaatccaatacaataataaggtcatctgaatgatggtcggcatgagggttctttcagtggaaatgggctgggcatttgcct > 6:414410‑M1/1‑38 (MQ=255) aCAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttaagtggaaatggtcttggcattggcctg > 7:250455‑M1/1‑37 (MQ=255) cAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctgg < 5:363968‑M1/149‑114 (MQ=255) cAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtct < 1:203669‑M1/135‑100 (MQ=255) cAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCTTTTCGGCCCCAATTAAAAACACCAAAGCCAAAAAAAAAATCAGGTAATAAGAATTATTGTCTGCATGATGGTGGTTTAAGTGGAAATGGTCttagatagg > 2:203669/1‑136 (MQ=255) aGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggt < 7:210574‑M1/149‑115 (MQ=255) ccGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaaaacaaacatcaggtcatctgaatgatggtctgcataatggtgctttcagtggaaatggtcttggcattggcctggtag > 7:152666‑M1/1‑33 (MQ=255) cGCTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagt > 8:356033‑M1/1‑32 (MQ=255) cTTCATTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttg < 8:207145‑M1/149‑120 (MQ=255) aTTCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctct < 8:383111‑M1/149‑124 (MQ=255) ttCGCGTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctg < 8:295065‑M1/149‑125 (MQ=255) gcgTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcatggcattggcctggtagttgctctgcgc > 5:223426‑M1/1‑22 (MQ=255) gTGAACCTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcacgtcaactgaatgatggtctgca > 6:194515‑M1/1‑20 (MQ=255) cTTCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgat > 5:162757‑M1/1‑14 (MQ=255) ttCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcag > 5:5491‑M1/1‑13 (MQ=255) tCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcagg > 5:339846‑M1/1‑12 (MQ=255) tCACATTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcagg > 2:275409‑M1/1‑12 (MQ=255) cacaTTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcag < 6:5491‑M1/147‑137 (MQ=255) cacaTTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttg < 4:104263‑M1/112‑102 (MQ=255) cacaTTCTTGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttg > 3:104263‑M1/1‑11 (MQ=255) cacaTTCTTGGggccgctttgcggcaccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgattgtctgcatgatggtgctttcagtgtaaatggtcttggcattggcctggtagttgctctgcgccttgatcag < 5:414410‑M1/147‑137 (MQ=255) ttGGggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcaggtttaccag > 4:218291‑M1/1‑4 (MQ=255) ttGGggccgcaaagcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcaggtttaccag > 3:216280‑M1/1‑4 (MQ=255) ggggccgctttgcggccccaattacaaacaccaaagccaatacaatcatcaggtcatctgaatgatggtctgcatgatggtgctttcagtggaaatggtcttggcattggcctggtagttgctctgcgccttgatcaggtttacca < 8:250455‑M1/146‑145 (MQ=255) | TGGGCCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑CGCTTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG > NC_002947/4980437‑4980727 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |