| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1731163 = | 62 (0.920) | 7 (0.130) | 7/218 | 6.6 | 13.2% | intergenic (‑76/+115) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
| ? | NC_002947 | 1731255 = | 43 (0.800) | intergenic (‑168/+23) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCAT > NC_002947/1731108‑1731400 | acggcGGGCAACTCTGCGGGGCGTTATCTTATATCAAATGGTGTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTCCTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTg < 4:304885/147‑1 (MQ=38) gcGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGca < 4:109456/148‑1 (MQ=255) ggggAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAg > 2:87987/1‑149 (MQ=255) ggAAATCTGACGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGt < 6:182815/149‑1 (MQ=255) aTCTGAGGGGCGTTATCTTAAATCAAATGGTTTCGGCCCGCACGCCCCTTTCGCGGGCACGCCCGCTCCCACCGGTACTGCACCGCTCTGACCCCCTGTGCCACGCCGGGGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGc < 6:18171/149‑1 (MQ=37) cTGCGGGGCGTTATCTTATATCAATTGGTTTCGGCCCGCACGGCCCATTCGCGGGCACGCCCGCTCCCACCGGTACTCCACCCCTCTGACCGCCTGTGCAAAGCCGGTGGGAGGGGGGGTGCCCGCGAATG‑GGCTGCACAGGTCGGcc < 2:144965/148‑1 (MQ=37) tGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGcc > 2:230304/1‑147 (MQ=255) gAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAg > 1:80356/1‑149 (MQ=255) cGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACCCCTGTGCCAAGCCGGTGGGCGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGCCCCAGGCACCt > 8:126082/1‑149 (MQ=255) tataTCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGcc < 6:180546/148‑1 (MQ=255) atatCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAg < 1:87987/145‑1 (MQ=255) atatCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAg < 2:80356/145‑1 (MQ=255) tCAAATGTTTTCGGGAAGCACGGCCCTTTCGCGGGCACGGCCGCTCCCACCGTTACTGCCCAGCTCTGAACGCCTGTGCCAAGCCGGTGGTAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCctgct < 6:243184/148‑1 (MQ=38) aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGc < 3:138857/131‑1 (MQ=255) aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGc > 4:138857/1‑131 (MQ=255) aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTgcg > 7:116922/1‑149 (MQ=255) ggTTTCGGGCAGCACGGCCCATTCGCGTGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCt‑t < 8:116922/148‑1 (MQ=255) cGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCctgct < 3:101505/137‑1 (MQ=255) cGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTATGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCctgct > 4:101505/1‑137 (MQ=255) cagcaCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCGGTGCCAAGCCGGGGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCtt > 8:376508/1‑149 (MQ=255) cccGGCCCATGCGCTGGCACGCCCGCGCCCACAGGTACTGCACAGCTCTCACCGCCTGTGCCAAGCCGGTGGGCGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCtt < 8:360133/144‑1 (MQ=38) caCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCCGGCAACTTCAAGCCTGCTGCGCG‑TGGGCAGCCtt > 7:360133/1‑146 (MQ=255) aCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTGAAGGCAGCCTTTTc > 1:138407/1‑149 (MQ=255) gCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCg > 8:188974/1‑149 (MQ=255) ccGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATGCGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑Tgg < 1:84201/117‑1 (MQ=255) ccGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑Tgg > 2:84201/1‑116 (MQ=255) tCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTgg > 7:37489/1‑134 (MQ=255) tCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTgg < 8:37489/134‑1 (MQ=255) ccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGc > 7:14530/1‑124 (MQ=255) ccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGc < 8:14530/124‑1 (MQ=255) ccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAAc > 5:306542/1‑149 (MQ=255) ccACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGCTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAAc < 7:126082/149‑1 (MQ=255) acaGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCaa > 5:229001/1‑93 (MQ=255) acaGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCaa < 6:229001/93‑1 (MQ=255) acaGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGc > 1:268240/1‑149 (MQ=255) acaGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCCGCGGGCTTGGGCAGCGACGACAGGAACGc > 7:198492/1‑149 (MQ=255) ggTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCa > 6:969/1‑148 (MQ=255) caGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAgcgc > 3:63194/1‑149 (MQ=255) gCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAg < 2:268240/149‑1 (MQ=255) ccTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAgg < 5:969/149‑1 (MQ=255) cTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCAt < 4:322360/127‑1 (MQ=255) cTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCAt > 3:322360/1‑127 (MQ=255) gtgCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCaa > 8:230423/1‑149 (MQ=255) gTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCa < 7:230423/149‑1 (MQ=255) ggAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGc < 7:188974/148‑1 (MQ=255) aGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAAc < 4:63194/149‑1 (MQ=255) gggCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATc < 8:342428/149‑1 (MQ=255) ggCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCg > 4:204313/1‑149 (MQ=255) gCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGc < 1:230304/149‑1 (MQ=255) gCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGc > 8:199492/1‑149 (MQ=255) gCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCAcc > 7:231762/1‑149 (MQ=255) ccGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGcc > 4:179983/1‑144 (MQ=255) ccGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGcc < 3:179983/144‑1 (MQ=255) gcgAATG‑GGCTGCACAGGTCGGCCCAGACAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAg > 8:377513/1‑148 (MQ=255) cgAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCCGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGaa < 8:198492/149‑1 (MQ=255) g‑ggCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCa > 4:170770/1‑149 (MQ=255) ggCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgac < 6:100137/75‑1 (MQ=255) ggCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgac > 5:100137/1‑75 (MQ=255) ggCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCAt < 2:138407/149‑1 (MQ=255) | AAGGCGGGGAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGGAGCGGGCGTGCCCGCGAATG‑GGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCT‑TGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGCAT > NC_002947/1731108‑1731400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |