| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 28.9% | 207.8 / 103.9 | 135 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (48/48); new base G (22/17); total (70/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.70e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 135 total aligned reads displayed.
GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACG > NC_002947/196210‑196495 | gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTAc < 5:192320/147‑1 (MQ=39)gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCg > 6:266391/1‑149 (MQ=39)gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCAACGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCg > 7:166010/1‑149 (MQ=255) aTCAACGACTCGGTCGTCACCACTACCGGGACCCTGACGGCGAGCCCGTCGGTCACCGTAGGC‑GGCGTGATCACTTTCACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACCAGTGACCCTGTCCAACGGCCAAACCATTACCg < 1:54799/149‑1 (MQ=14) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCg > 2:54799/1‑148 (MQ=39) aTCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGt > 6:230796/1‑149 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGtt < 3:358843/149‑1 (MQ=39) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGa > 4:113440/1‑148 (MQ=39) cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCg < 2:209435/149‑1 (MQ=39) tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 5:204578/1‑149 (MQ=39) gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCa > 6:237672/1‑148 (MQ=39) tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaaa < 1:249473/149‑1 (MQ=40) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAc > 7:28611/1‑149 (MQ=40) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCATGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGAc < 3:268103/149‑1 (MQ=25) caccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACAAAGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAAcc > 1:133062/1‑148 (MQ=255) accacTACCTCGACCCTGACTGAGAGCCCGTCGGTCACCTAAGGC‑GGCGTGATCACTTACACCGAGAACCTGAGCAATCCAGACCAGACTCCGTTGA‑CAGTGACCCTGTCCAACTGCCAAACCATTACCGTTTAAGCCGGCAAAACCCa < 1:293523/149‑1 (MQ=11) ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAg < 4:181486/149‑1 (MQ=17) acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg < 6:257068/149‑1 (MQ=17) cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACAGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAggg > 8:118707/1‑148 (MQ=14) caCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAggg > 2:309281/2‑147 (MQ=9) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGtt > 5:411593/1‑125 (MQ=32) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCa < 4:329338/147‑1 (MQ=34) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCg > 7:78430/1‑149 (MQ=12) cgcgACCCTGACGGCGAGCCCATCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGC‑ATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt > 1:1019/1‑149 (MQ=19) ccTGACGGCGAGCCCGTCGGTCACCGAAGGCAGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGac > 1:41415/1‑148 (MQ=11) cTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACACTGAGCAACCCAGCCCAGACGCCGGTGA‑CCGTGACCATCTCCAACGGACAAACGATTACCGTTGAAGCCGGCAAAACCCACGGCAGAGTCGActt > 6:349883/1‑149 (MQ=11) tGACGTCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCTATCCTTCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCa < 3:35420/133‑1 (MQ=255) tGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc > 6:185900/1‑149 (MQ=255) aCGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTcc < 2:334808/148‑1 (MQ=34) gAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAccc < 2:239881/149‑1 (MQ=255) cccGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg > 8:262460/1‑149 (MQ=34) ccGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGc < 7:262460/149‑1 (MQ=34) ggTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATg < 4:258882/149‑1 (MQ=255) gTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg < 6:132131/107‑1 (MQ=32) gTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCgg > 5:132131/1‑107 (MQ=32) gTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 5:326483/1‑149 (MQ=34) tCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt < 2:262501/128‑1 (MQ=35) tCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAt > 1:262501/1‑128 (MQ=35) aCCGAAGGC‑GGCGTGATCACTTACCCCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGCCCCAGGCGAATGACGt > 8:182707/1‑149 (MQ=11) cGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 3:387221/1‑148 (MQ=34) cGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 7:275423/1‑148 (MQ=255) gAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 8:28611/149‑1 (MQ=34) aaGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc < 3:234944/143‑1 (MQ=34) aaGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac < 7:270338/149‑1 (MQ=34) ggc‑ggcGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaag > 6:20745/1‑101 (MQ=14) ggc‑ggcGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCaag < 5:20745/102‑2 (MQ=14) ggcgTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTAcaacaa > 8:103318/1‑149 (MQ=21) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACgacaac > 2:218592/1‑149 (MQ=11) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa < 7:181306/145‑1 (MQ=255) tGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 8:181306/1‑145 (MQ=255) gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 5:334081/1‑149 (MQ=34) tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt < 7:69288/133‑1 (MQ=34) tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGt > 8:69288/1‑133 (MQ=34) cACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 1:57733/1‑149 (MQ=34) cACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCg < 1:108564/148‑1 (MQ=255) aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 4:254057/148‑1 (MQ=34) aCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAATCGATTACCGTTGAAGCCGGCAAAACCCATGGCAGCGTCGACTTCCAGACACCGGCGAATGACGTCTACAACAACGGTTCGa < 5:349883/148‑1 (MQ=11) aCTTACACCGTGACCCTGAGC‑ATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 2:1019/149‑1 (MQ=25) cTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 8:335801/1‑149 (MQ=34) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 8:275423/149‑1 (MQ=255) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt < 7:228702/149‑1 (MQ=255) tttgaccgtgaccgtgAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGGGTCGATTTCGAGACGCCGGCGAATGACGTCTACAACAACGGTTc < 2:3514/140‑1 (MQ=11) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc > 7:100351/1‑109 (MQ=33) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 8:234237/132‑1 (MQ=33) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 7:234237/1‑132 (MQ=33) ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCAATACCGTTCAAGACGGCAAAACCCAGGGCAGCGACGAATTCCAGACCCCCGCGAATGACGTCTACAACAACGGATCGaga > 1:3514/1‑146 (MQ=11) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg > 7:227382/1‑149 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 5:131243/1‑128 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 5:50323/1‑148 (MQ=255) acacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 5:236398/148‑1 (MQ=255) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc < 2:57733/148‑1 (MQ=34) tGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTc < 2:133062/149‑1 (MQ=37) tGACCCTGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACGACAACGGTTCGACTGTCAGCGTc < 1:218592/149‑1 (MQ=11) aCCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 7:103318/148‑1 (MQ=37) aCCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 7:335801/148‑1 (MQ=37) tGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGATAGACTCTCAGTGTCACCaac > 6:330201/1‑147 (MQ=255) tGAGCAACCCTGCCCAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAAGGATTAGCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc < 2:154470/100‑1 (MQ=11) gAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGTCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 1:337047/131‑1 (MQ=17) gAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa > 2:337047/1‑131 (MQ=32) aGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg < 6:334081/148‑1 (MQ=37) aTCCTGCCCATACGCCGGTGA‑CAGTTACACTGTCCAAAGGCCAAACCATTACCGTTGAAGCAGGCAAAACCCATGGCAGCGTCGATTTACAGACACCTGCGAATGACGTCTACAAAAACGGATCGACTGTCAGTGTCACCATAgacag > 8:367580/1‑145 (MQ=11) aTCCTGCCCAGACGCCTGTGA‑CAGTGAACCTGTCCAACGGCCAAACCATTACCTTTTAAGACGGCAAAACCCATGGCAGCGTATATTTCCAGAGCCCGTCGAATGACGTCTACAACAACTGTTCGACTGTCAGTGTCACCATcta < 7:367580/145‑3 (MQ=11) gCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGcctc > 3:28324/1‑147 (MQ=37) cccAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc < 3:191422/88‑1 (MQ=11) cccAGACGCCGGTGA‑CCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGAc > 4:191422/1‑88 (MQ=11) cccAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc > 8:14383/1‑143 (MQ=37) ccAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcg > 7:172051/1‑149 (MQ=38) cGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa < 8:367673/97‑1 (MQ=33) cGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa > 7:367673/1‑97 (MQ=33) cGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCg < 2:12997/129‑1 (MQ=38) a‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCTCCGGCGGTAATTTCGa < 4:28324/149‑1 (MQ=255) a‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCg < 1:233828/148‑1 (MQ=39) accgTGACCCTGACCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 8:78189/4‑104 (MQ=1) accgTGACCCTGACCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc < 7:78189/101‑1 (MQ=1) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa > 6:69054/1‑87 (MQ=33) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTacaa < 5:69054/87‑1 (MQ=33) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCg > 7:53652/1‑148 (MQ=37) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCg > 6:170507/1‑148 (MQ=37) aaCGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa > 1:177986/1‑149 (MQ=37) aaaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACg > 4:273698/1‑149 (MQ=39) | GATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGC‑GGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGA‑CAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACG > NC_002947/196210‑196495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |