| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 4,980,585 | +GGC | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4980585 | 0 (0.000) | 47 (0.650) +GGC |
43/272 | 0.6 | 100% | intergenic (‑24/+44) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE |
| ? | NC_002947 | 4980586 = | 0 (0.000) | intergenic (‑25/+43) | PP_4387/flgE | hypothetical protein/flagellar hook protein FlgE | |||||
CCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4980441‑4980585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCT > NC_002947/4980586‑4980729 ||| CCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGCCAGGCAGAACCAGCACCAGCAAGGGGAACAACGCCAGAAACGACAGCCGCTTCATACGCGTCAACCTTCACATTCATGGGt > 4:289438/1‑146 TGACCAGCCTTTGCCATTCATAGAACGCGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTAC < 4:349792/147‑1 AGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACA > 4:165281/1‑147 CTTTGACATTGATAGAACGGGTCGGTGGCAGCGGGGGAAGGCAGAAACAGCACCAGCAAGGGGAACAAGGCCAGTAACGACACCCGCTTAATTCCAGTGAACCTTCACATTCTTGGGGCag > 1:268095/1‑119 ATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACA > 4:397789/1‑147 TAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACA > 4:310096/1‑146 CGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCA > 4:119519/1‑145 GGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGCCAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGT > 7:26881/1‑148 tGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGTGAACAAGGCCAGTAACGACAGCCTCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATC < 3:289438/146‑1 gctGCGGGGGAAGGCAGAACCAGCACCAGAAAGGGGAACAAGGCCAGTAACGACAGCCGCTGCATTCGCGGGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑G < 4:239708/144‑1 GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCA‑AAGCGGCCCCAAgaa > 6:231533/1‑105 GCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCA‑AAGCGGCCCCAAgaa < 5:231533/108‑4 GGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGAT < 3:165281/147‑1 GGCAGGCAGAACCAGCACCAGCAAGGTGAACAAAGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGT > 1:17632/1‑148 CAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGAGGGTC > 4:317582/1‑147 CAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCGCCAAATACAAACACCAAACCCAAAACAATCATCAGGTCATCT‑GAATGATGGGCTGCAT > 1:208900/1‑148 AGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGC < 6:334083/76‑1 AGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGC > 5:334083/1‑76 AAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTG < 7:237209/148‑1 AGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCCATTACAAACACCAAAGCCAATAAAATCATCAGGTGATGT‑GTATGATTGTCTGCATGATGGTGGGTTAAGTG > 6:280157/1‑147 AGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTG < 3:119519/147‑1 GGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCTTCT‑GAATGATGGTCTGCATGATGGTGCTTTCAG < 8:231871/144‑1 GGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTG > 6:413023/1‑146 GGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAG > 7:231871/1‑144 GGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCG‑TTGGGGCGCCAATTACACACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGG > 6:128525/1‑146 GGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAA > 4:335647/1‑147 GAACAAAGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAAT < 2:17632/148‑1 ACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATG > 6:118855/1‑147 CCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTG > 4:283979/1‑147 CAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGG > 1:379124/1‑147 AGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATAAGGTAATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCA > 1:79648/1‑148 CAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTG > 7:75319/1‑148 CAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCT < 3:397789/147‑1 GCCGCTTCATTCGCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGG < 5:172348/147‑1 GCGTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTG < 2:32844/146‑1 CGTGAACCTTCACATTCTTGGGGCCGCTGTTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGC > 1:32844/1‑147 GTGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTGTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGGCTTGGCCTGGTAGTTGCTCTGCGCC > 1:393621/1‑148 TGAACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCC > 6:337409/1‑147 ACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGA > 7:106918/1‑148 ACCTTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTG > 4:397521/1‑147 TTCACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACCAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGA > 5:22002/1‑145 CACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCA < 8:75319/146‑1 ACATTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGG < 8:106918/147‑1 TTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGT < 7:312163/121‑1 TTCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGT > 8:312163/1‑121 TCTTGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTA < 3:310096/147‑1 TGGGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGATTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCA > 4:4288/1‑147 GGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCT > 8:275868/1‑148 GGGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAG < 3:283979/146‑1 GGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCTGGAATAATGGTCTGCATGATGGTGCTTTCAGTGTAAATGGTATTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGAAAAGGTTTACAAGa > 1:332704/1‑146 GGCCGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCT > 6:61504/1‑147 ||| CCGAACACAGGTAGCGGCCGGTGACCAGGCTTTGCCATTGATAGAACGGGGCGGGGGCAGCGGGGGCAGGCAGAACCAGCACCAGCAAGGGGAACAAGGCCAGTAACGACAGCCGCTTCATTCGCGTGAACCTTCACATTCTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4980441‑4980585‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCT‑TTGCGGCCCCAATTACAAACACCAAAGCCAATACAATCATCAGGTCATCT‑GAATGATGGTCTGCATGATGGTGCTTTCAGTGGAAATGGTCTTGGCATTGGCCTGGTAGTTGCTCTGCGCCTTGATCAGGTTTACCAGCT > NC_002947/4980586‑4980729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |