| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 2 (0.030) | 53 (0.730) +GCC |
44/272 | 0.6 | 96.4% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 2 (0.030) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5555463‑5555749 | cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGg < 5:373206‑M1/147‑2 (MQ=255)cTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCGCAGGTGTGGGAGCGGCCTTGTGTGGCGG‑AAGGGGCGCCTA‑‑‑GCGg > 4:171353‑M1/1‑146 (MQ=255) cACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgcccc > 5:402298‑M1/1‑142 (MQ=255) cTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCTgccccggc < 1:348820‑M1/148‑9 (MQ=255) tCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCAGCCTTTTTTAGAGA‑AACGGCCCCAAA‑‑‑GCGggccccgccatttacccgtgt > 8:31886‑M1/1‑127 (MQ=255) cAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgcctcggcaatttccgcgtgta > 2:317157‑M1/1‑126 (MQ=255) gTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatg < 4:290232‑M1/147‑25 (MQ=255) tCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatg > 6:407480‑M1/1‑122 (MQ=255) tCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatg < 6:418613‑M1/146‑25 (MQ=255) tCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatg > 5:418613‑M1/1‑122 (MQ=255) tCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcg < 8:7131‑M1/140‑19 (MQ=255) tCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcg > 7:7131‑M1/1‑122 (MQ=255) ccTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaaca > 8:186023‑M1/1‑118 (MQ=255) cTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaa > 2:273966‑M1/1‑117 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGACAAGGGCCGCATA‑‑‑GCGgcctcggcaatttccgcgtgtatgcaacaaacct < 1:317157‑M1/148‑35 (MQ=255) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctg < 5:296609‑M1/147‑36 (MQ=255) gATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggct < 7:186023‑M1/148‑41 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgct < 4:196803‑M1/146‑44 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctat > 4:171170‑M1/1‑102 (MQ=255) cGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTGGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttacgcgtgtatgcaacaaacctggggctgctat > 5:294237‑M1/1‑101 (MQ=255) ggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca < 3:171170‑M1/147‑49 (MQ=255) cGGACATGAGCAACTCCTTTTGTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcc < 8:108554‑M1/148‑52 (MQ=255) gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTCGCGA‑AAGGGCCCCATA‑‑‑GCGgccccgggaatttccgcgtgtttgccacaaacctgggggtgctatgcagcccg > 7:214874‑M1/1‑95 (MQ=255) aGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcaccccattccc > 5:79516‑M1/1‑89 (MQ=255) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc < 4:192571‑M1/146‑59 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagc > 8:194081‑M1/1‑83 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagc < 7:194081‑M1/133‑51 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGGGTGGGAGCGGCCTTGAGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaa < 7:193391‑M1/146‑66 (MQ=255) cATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑ACGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtaagcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccaca < 3:249605‑M1/147‑74 (MQ=255) tgtgTCGCCGACAGCATAGCAACACCGCCCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaa < 3:171353‑M1/146‑75 (MQ=255) ccGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCGA‑AAGGGCCGCAAATGGGCC‑‑‑CCGGCAAATTACCCGTGTATGGAAAAAACCAGGGGCTGCTATGCAGCCCGTTAGCGACCCAAGGCCCACAAACGaaaccg > 2:300804/1‑143 (MQ=255) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcag > 3:248786‑M1/1‑64 (MQ=255) aCAGCATAGCAACACCGGTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgca < 5:107758‑M1/147‑86 (MQ=255) aGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcagg < 5:421897‑M1/147‑88 (MQ=255) aGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttca < 5:407480‑M1/147‑93 (MQ=255) gCAACACCGCTCAGGTGTGGGAGCTGCCTTGTTTCGCTA‑AAGGGCCGCATA‑‑‑GGGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcag < 7:31886‑M1/147‑94 (MQ=255) acCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccg < 5:160654‑M1/147‑99 (MQ=255) tCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaact < 3:165899‑M1/147‑104 (MQ=255) tgtgGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctggtatgcaggccgttcgcggcacaaggcccacaaaggaccgcgccggcgtccggcccggcactggc > 5:209273‑M1/1‑39 (MQ=255) gAGCGGCCTTGTGTAGCGA‑AAGGGCCGCATA‑‑‑GCGGCCCCGGCAAATTACGCGTGTATGCAACAAACCAGGGGCTGCTATGCAGCCCATTCCCGCCACAACGCCCACAAACGACCCCCCACGCATCAGGCCCGGAACAGGCCCACGca > 6:417853/1‑146 (MQ=255) ttGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatatccgcgggtaggcaacaaacctggggctgctatgcagcgctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgca < 5:315718‑M1/147‑122 (MQ=255) tgtCGCGA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacacggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagct > 8:344162‑M1/1‑23 (MQ=255) cgcgA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgcgc > 8:193284‑M1/1‑20 (MQ=255) cgcgA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc > 1:202155‑M1/1‑20 (MQ=255) cgcgA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgag > 5:413609‑M1/1‑20 (MQ=255) cgcgA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgag > 4:173820‑M1/1‑20 (MQ=255) cgA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctttgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg > 2:185936‑M1/1‑18 (MQ=255) cgA‑AAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg > 7:182500‑M1/1‑18 (MQ=255) a‑aaGGGCCGCATA‑‑‑GCGgccccggcaatttcctcgtgtatgcaacaaagctggggctgctatgcagccctttcgggacacaaggcccacaaaggaccgcgcaggcttcatgcccggatgtggcccaggctggcgcgcagctgagcgg < 6:235914‑M1/146‑131 (MQ=255) a‑aaGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactgg > 4:75809‑M1/1‑16 (MQ=255) a‑aaGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactgg < 3:75809‑M1/121‑106 (MQ=255) a‑aaGGGCCGCATA‑‑‑GAGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcatcacgcccgtaactggcccaggctggcgcgcagctgacccg > 5:235914‑M1/1‑16 (MQ=255) cGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcat < 1:273966‑M1/148‑140 (MQ=255) cATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc < 5:40237‑M1/147‑141 (MQ=255) cATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatc > 1:40426‑M1/1‑7 (MQ=255) tA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca < 6:413609‑M1/147‑143 (MQ=255) cGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagc < 5:417853‑M1/146‑145 (MQ=255) | CTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGA‑AAGGGCCGCATA‑‑‑GCG‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5555463‑5555749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |