Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3510CG28.3% 192.1 / 110.5 127T619T (ACC→ACG) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base C (48/43);  new base G (17/19);  total (65/62)
Fisher's exact test for biased strand distribution p-value = 6.94e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-02
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 131 total aligned reads displayed.

CCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAC  >  NC_002947/196206‑196494
                                                                                                                                                     |                                                                                                                                               
  aCGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCCGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCAtt                                                                                                                                              >  3:134469/1‑147 (MQ=255)
      tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCg                                                                                                                                          <  3:385568/147‑1 (MQ=39)
       cAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACTCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGt                                                                                                                                         <  4:97278/147‑1 (MQ=255)
        aaCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGtt                                                                                                                                        <  7:246952/147‑1 (MQ=39)
         aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGa                                                                                                                                      <  1:163284/148‑1 (MQ=39)
            aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGc                                                                                                                                   <  2:397011/148‑1 (MQ=39)
             cTCGGTCGACACCACTACCGCGCCCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGc                                                                                                                                   >  4:341672/1‑147 (MQ=255)
             cTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGc                                                                                                                                   >  3:50121/1‑147 (MQ=39)
             cTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCa                                                                                                                                                <  7:207379/134‑1 (MQ=21)
             cTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAAACCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCa                                                                                                                                                >  8:207379/1‑134 (MQ=21)
                ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTAAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCg                                                                                                                                 <  1:241133/146‑1 (MQ=255)
                 gTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCg                                                                                                                                 <  4:203392/145‑1 (MQ=39)
                  tCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCgg                                                                                                                                >  3:176593/1‑145 (MQ=39)
                       accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAGAc                                                                                                                          >  6:414456/1‑146 (MQ=17)
                       accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACAGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAAc                                                                                                                          >  6:311925/1‑146 (MQ=38)
                        ccacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCa                                                                                                                       <  8:102902/148‑1 (MQ=37)
                         cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAGACCCa                                                                                                                       <  6:124803/147‑1 (MQ=17)
                          accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAg                                                                                                                      <  3:186229/144‑1 (MQ=0)
                          accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAg                                                                                                                      <  6:197811/144‑1 (MQ=0)
                          acTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAGACCCAgg                                                                                                                     >  8:186749/1‑148 (MQ=17)
                           ccaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                                    <  7:180420/146‑1 (MQ=2)
                           cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAGACCCAggg                                                                                                                    <  2:184276/148‑1 (MQ=14)
                           cTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAGACCCAggg                                                                                                                    >  1:27680/1‑148 (MQ=14)
                            caCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAggg                                                                                                                    <  5:229878/146‑1 (MQ=9)
                                gcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTAc                                                                                                                                            >  5:128433/1‑119 (MQ=32)
                                  gACCCTGACGGCGAGCGCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACGCTGAGCAACCGTGCCGAGACTCCGGTGACCGTGACG‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGt                                                                                                              <  4:210691/147‑1 (MQ=11)
                                      cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTCACACTGACC‑CTGTCCAAAG‑‑GC‑CACAACATTACAGTTGAAGCCGCCAACACCAACGGCAGCgagcat                                                                                                          >  6:41466/1‑142 (MQ=11)
                                      cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCaaa                                                                                                                            <  6:19671/129‑1 (MQ=12)
                                      cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCaaa                                                                                                                            >  5:19671/1‑129 (MQ=12)
                                       tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt                                                                                                         <  5:23174/147‑1 (MQ=34)
                                         aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc                                                                                                       >  1:371834/1‑147 (MQ=255)
                                          cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGAAC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGAAAAACCCAGGGCAGCGTCGATTTCCa                                                                                                     >  8:314514/1‑148 (MQ=11)
                                                  ccGTCGGTGACCGAAGGCGGCGTGATCACTTACACCGTGAGCCTGAGCAATCCTGCCCAGACGCCGGTGACTGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCTTTGAAGcc                                                                                                                                  <  6:234824/111‑1 (MQ=11)
                                                  ccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                                             <  2:280479/148‑1 (MQ=255)
                                                   cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg                                                                                             <  3:301447/147‑1 (MQ=34)
                                                   cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa                                                                                                   <  1:101396/141‑1 (MQ=255)
                                                    gTCGGTCACCGAAGGCGGCGTGATCACTTACCCCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa                                                                                                   >  2:95614/1‑140 (MQ=11)
                                                    gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAgc                                                                                                   <  1:95614/140‑2 (MQ=255)
                                                    gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACGTCCAGACCCCgg                                                                                             >  5:389933/1‑146 (MQ=11)
                                                     tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCg                                                                                           <  5:4396/147‑1 (MQ=255)
                                                        gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTTACAGTGACCTCTGTCCAACG‑‑GC‑CAAACCATTACCg                                                                                                                                          <  1:221814/98‑1 (MQ=255)
                                                         tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg                                                                                       >  3:157421/1‑147 (MQ=34)
                                                           aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc                                                                                     >  3:333049/1‑147 (MQ=34)
                                                            ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCACAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAACCCAAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc                                                                                     >  3:186146/1‑146 (MQ=255)
                                                            ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                                             <  8:271076/138‑1 (MQ=255)
                                                              gAAGGCGGCGTGATCACTTACACCGTGAGCCTGAGCAATCCTGCCCAGACGCCGGTTACCGTGACC‑CTGTCCAACGCTTCTCAAACGATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACg                                                                                    <  1:132521/148‑1 (MQ=11)
                                                              gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCaa                                                                                                                             >  7:133299/1‑104 (MQ=32)
                                                              gAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc                                                                                  >  7:107681/1‑147 (MQ=255)
                                                               aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGTCCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCt                                                                                 <  4:13843/147‑1 (MQ=11)
                                                                aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                                <  4:56748/147‑1 (MQ=34)
                                                                aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                                <  3:418193/147‑1 (MQ=34)
                                                                      cgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa                                                                          <  3:111594/147‑1 (MQ=255)
                                                                      cgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACCTCCAGACCCCGGCGAATGACGTCTAcaacaa                                                                          >  4:153927/1‑147 (MQ=11)
                                                                       gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac                                                                         <  4:18793/147‑1 (MQ=255)
                                                                         gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg                                                                       <  4:50121/147‑1 (MQ=34)
                                                                         gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCAGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg                                                                       >  6:259055/1‑147 (MQ=21)
                                                                          aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                     >  2:372960/1‑148 (MQ=255)
                                                                           tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                     >  3:342051/1‑147 (MQ=34)
                                                                             aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGGGAATGACGTCTACAACAACGGTTCg                                                                   >  5:314427/1‑147 (MQ=21)
                                                                              cctACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                                  >  4:193756/3‑147 (MQ=11)
                                                                               ttACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCAtt                                                                                                                                              >  6:114356/1‑70 (MQ=31)
                                                                               ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                                  <  6:129081/146‑1 (MQ=255)
                                                                                tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCAGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                                                >  5:56124/1‑147 (MQ=11)
                                                                                  cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGTAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt                                                              <  1:111889/147‑1 (MQ=11)
                                                                                  cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg                                                               >  5:192119/1‑146 (MQ=255)
                                                                                   acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTc                                                             <  4:333049/147‑1 (MQ=34)
                                                                                   acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa                                                            >  1:350587/1‑148 (MQ=34)
                                                                                    ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa                                                                                         <  8:320457/118‑1 (MQ=32)
                                                                                    ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa                                                                                         >  7:320457/1‑118 (MQ=32)
                                                                                      gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                       <  1:86731/102‑1 (MQ=32)
                                                                                      gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                       >  2:86731/1‑102 (MQ=32)
                                                                                      gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGCCC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGCCTGTCAgcg                                                         >  7:371480/1‑146 (MQ=11)
                                                                                      gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc                                                          >  3:364137/1‑146 (MQ=255)
                                                                                       tGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑ATGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGTAAAACCCAGGGCAGCGTCGATTTcc                                                                                                      >  2:244430/1‑102 (MQ=12)
                                                                                           ccTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACC‑CTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAAcc                                                                                                                         <  2:168647/79‑1 (MQ=11)
                                                                                            cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                 >  5:87782/1‑134 (MQ=32)
                                                                                            cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                 <  6:87782/134‑1 (MQ=32)
                                                                                               aGCAATCCTGCCAAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCAAGACACCGGCGAATGACTTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                                                 >  7:354040/1‑147 (MQ=255)
                                                                                                gCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga                                               <  1:95757/148‑1 (MQ=37)
                                                                                                 cAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                                                 >  8:366807/1‑145 (MQ=37)
                                                                                                 cAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag                                              <  7:286527/148‑1 (MQ=37)
                                                                                                  aaTCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag                                              <  3:419798/147‑1 (MQ=37)
                                                                                                    tCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa                                            <  3:193756/147‑1 (MQ=37)
                                                                                                     ccTGCCCAGACGCCGGTAACAGTGAAC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                           <  3:371631/131‑1 (MQ=255)
                                                                                                          ccAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg                                                                                              >  6:219402/1‑91 (MQ=33)
                                                                                                           cAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAcc                                     >  4:120432/1‑147 (MQ=38)
                                                                                                            aGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcg                                    <  4:342051/147‑1 (MQ=38)
                                                                                                               cGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                                 <  5:259055/147‑1 (MQ=39)
                                                                                                                  cGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTaa                             >  1:240880/1‑148 (MQ=39)
                                                                                                                    gTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                                                                        >  3:181183/1‑71 (MQ=34)
                                                                                                                            gACC‑CTGCCCAACG‑‑GC‑CAAACCCTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACCCCACCGCCGGTAATTTCGAGCa                    <  4:396910/147‑1 (MQ=11)
                                                                                                                                 cTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACATCTACAACAACGGATCGACTGTCAGAGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGAAACTg                >  2:357508/1‑147 (MQ=11)
                                                                                                                                 cTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTg                >  5:196437/1‑147 (MQ=37)
                                                                                                                                       aaCG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc           >  5:211919/1‑146 (MQ=37)
                                                                                                                                        aCG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa        >  7:91236/1‑148 (MQ=37)
                                                                                                                                         cG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa        <  4:87198/147‑1 (MQ=37)
                                                                                                                                                  aaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc  >  5:384750/1‑147 (MQ=39)
                                                                                                                                                    ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt       <  6:82026/140‑1 (MQ=38)
                                                                                                                                                    ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc  >  5:41683/1‑145 (MQ=39)
                                                                                                                                                    ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc  <  6:41683/145‑1 (MQ=39)
                                                                                                                                                     |                                                                                                                                               
CCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACC‑CTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAC  >  NC_002947/196206‑196494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑