Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947196,3900TC25.7% 175.6 / 67.0 105D632D (GAT→GAC) PP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base T (38/40);  new base C (14/13);  total (52/53)
Fisher's exact test for biased strand distribution p-value = 8.26e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 109 total aligned reads displayed.

TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCAC  >  NC_002947/196245‑196536
                                                                                                                                                    |                                                                                                                                                  
tGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAtt                                                                                                                                                   <  5:23174/147‑1 (MQ=34)
  aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTc                                                                                                                                                 >  1:371834/1‑147 (MQ=255)
   cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc                                                                                                                                                <  3:179056/147‑1 (MQ=255)
   cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTcc                                                                                                                                                <  4:58651/147‑1 (MQ=255)
   cGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACATACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGAACCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGAAAAACCCAGGGCAGCGTCGATTTCCa                                                                                                                                               >  8:314514/1‑148 (MQ=11)
           ccGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                                                                                       <  2:280479/148‑1 (MQ=255)
            cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCgg                                                                                                                                       <  3:301447/147‑1 (MQ=34)
            cGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa                                                                                                                                             <  1:101396/141‑1 (MQ=255)
             gTCGGTCACCGAAGGCGGCGTGATCACTTACCCCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGa                                                                                                                                             >  2:95614/1‑140 (MQ=11)
             gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAgc                                                                                                                                             <  1:95614/140‑2 (MQ=255)
             gTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACGTCCAGACCCCgg                                                                                                                                       >  5:389933/1‑146 (MQ=11)
              tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGa                                                                                                                                    <  1:384095/148‑1 (MQ=34)
              tCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCg                                                                                                                                     <  5:4396/147‑1 (MQ=255)
                 gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa                                                                                                                                   >  3:87198/1‑146 (MQ=34)
                  tCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATg                                                                                                                                 >  3:157421/1‑147 (MQ=34)
                    aCCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc                                                                                                                               >  3:333049/1‑147 (MQ=34)
                     ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCACAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAACCCAAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGAc                                                                                                                               >  3:186146/1‑146 (MQ=255)
                     ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                                                                                       <  8:271076/138‑1 (MQ=255)
                     ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCgg                                                                                                                                       >  7:271076/1‑138 (MQ=255)
                       gAAGGCGGCGTGATCACTTACACCGTGAGCCTGAGCAATCCTGCCCAGACGCCGGTTACCGTGACCCTGTCCAACGCTTCTCAAACGATTACCGTTGAAGCCGGCAAACCCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACg                                                                                                                              <  1:132521/148‑1 (MQ=11)
                        aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGTCCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCt                                                                                                                           <  4:13843/147‑1 (MQ=11)
                         aGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTa                                                                                                                          <  4:56748/147‑1 (MQ=34)
                               cgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa                                                                                                                    <  3:111594/147‑1 (MQ=255)
                               cgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACCTCCAGACCCCGGCGAATGACGTCTAcaacaa                                                                                                                    >  4:153927/1‑147 (MQ=11)
                                gTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACaacaac                                                                                                                   <  4:18793/147‑1 (MQ=255)
                                 tGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg                                                                                                                 >  2:410560/1‑148 (MQ=34)
                                  gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg                                                                                                                 <  4:50121/147‑1 (MQ=34)
                                  gATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCAGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACgg                                                                                                                 >  6:259055/1‑147 (MQ=21)
                                   aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                                                               >  7:36715/1‑148 (MQ=34)
                                   aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                                                               >  2:372960/1‑148 (MQ=255)
                                    tCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt                                                                                                               >  3:342051/1‑147 (MQ=34)
                                      aCTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGGGAATGACGTCTACAACAACGGTTCg                                                                                                             >  5:314427/1‑147 (MQ=21)
                                       cctACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                                                                            >  4:193756/3‑147 (MQ=11)
                                        ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                                                                            >  5:129081/1‑146 (MQ=255)
                                        ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa                                                                                                            <  6:129081/146‑1 (MQ=255)
                                         tACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCAGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt                                                                                                          >  5:56124/1‑147 (MQ=11)
                                           cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGTAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt                                                                                                        <  1:111889/147‑1 (MQ=11)
                                           cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg                                                                                                         >  5:192119/1‑146 (MQ=255)
                                            acCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa                                                                                                      >  1:350587/1‑148 (MQ=34)
                                            acCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt                                                                                                        >  7:125124/1‑146 (MQ=255)
                                             ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa                                                                                                                                   >  7:320457/1‑118 (MQ=32)
                                             ccGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGaa                                                                                                                                   <  8:320457/118‑1 (MQ=32)
                                               gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                                                                 <  1:86731/102‑1 (MQ=32)
                                               gTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTc                                                                                                                                                 >  2:86731/1‑102 (MQ=32)
                                               gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGCCCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGCCTGTCAgcg                                                                                                   >  7:371480/1‑146 (MQ=11)
                                               gTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgc                                                                                                    >  3:364137/1‑146 (MQ=255)
                                                tGACCCTGAGCAATCCTGCCCAGACGCCGGTCACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGTAAAACCCAGGGCAGCGTCGATTTcc                                                                                                                                                <  1:244430/102‑1 (MQ=12)
                                                 gACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtgt                                                                                                  <  5:311925/147‑1 (MQ=37)
                                                     cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                                                           <  6:87782/134‑1 (MQ=32)
                                                     cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGAc                                                                                                           >  5:87782/1‑134 (MQ=32)
                                                     cTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCa                                                                                             >  8:286527/1‑148 (MQ=37)
                                                        aGCAATCCTGCCAAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCAAGACACCGGCGAATGACTTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                                                                                           >  7:354040/1‑147 (MQ=255)
                                                         gCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCga                                                                                         <  1:95757/148‑1 (MQ=37)
                                                          cAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGTCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATc                                                                                           >  8:366807/1‑145 (MQ=37)
                                                          cAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag                                                                                        <  7:286527/148‑1 (MQ=37)
                                                           aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCgag                                                                                        <  3:419798/147‑1 (MQ=37)
                                                             tCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGaa                                                                                      <  3:193756/147‑1 (MQ=37)
                                                              ccTGCCCAGACGCCGGTAACAGTGAACCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCGGGTAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAg                                                                                                     <  3:371631/131‑1 (MQ=255)
                                                               cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGc                                                                                   <  2:350587/148‑1 (MQ=37)
                                                                   ccAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCg                                                                                                                                        >  6:219402/1‑91 (MQ=33)
                                                                    cAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCAcc                                                                               >  4:120432/1‑147 (MQ=38)
                                                                     aGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcg                                                                              <  4:342051/147‑1 (MQ=38)
                                                                        cGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACcggcg                                                                           <  5:259055/147‑1 (MQ=39)
                                                                           cGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTaa                                                                       >  1:240880/1‑148 (MQ=39)
                                                                             gTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                                                                                                                  >  3:181183/1‑71 (MQ=34)
                                                                             gTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGAttt                                                                                                                                                  <  4:181183/71‑1 (MQ=34)
                                                                                 cAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGAGTCACCATCGAGAACGCCACCGGCGGTAAttt                                                                    >  3:198720/1‑145 (MQ=14)
                                                                                     gACCCTGCCCAACG‑‑GC‑CAAACCCTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCTATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACCCCACCGCCGGTAATTTCGAGCa                                                              <  4:396910/147‑1 (MQ=11)
                                                                                       cccTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACt                                                           <  8:36715/148‑1 (MQ=37)
                                                                                         cTGTCCAACG‑‑GC‑CAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACATCTACAACAACGGATCGACTGTCAGAGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGAAACTg                                                          >  2:357508/1‑147 (MQ=11)
                                                                                         cTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTg                                                          >  5:196437/1‑147 (MQ=37)
                                                                                               aaCG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACACCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc                                                     >  5:211919/1‑146 (MQ=37)
                                                                                                aCG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa                                                  >  7:91236/1‑148 (MQ=37)
                                                                                                 cG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa                                                  <  3:120432/147‑1 (MQ=37)
                                                                                                 cG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaa                                                  <  4:87198/147‑1 (MQ=37)
                                                                                                          aaCCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc                                            >  5:384750/1‑147 (MQ=39)
                                                                                                            ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt                                                 >  5:82026/1‑140 (MQ=38)
                                                                                                            ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt                                                 <  6:82026/140‑1 (MQ=38)
                                                                                                            ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc                                            >  5:41683/1‑145 (MQ=39)
                                                                                                            ccATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc                                            <  6:41683/145‑1 (MQ=39)
                                                                                                                  ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCt                                     >  8:33856/1‑146 (MQ=39)
                                                                                                                   cGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTc                                    <  6:196437/146‑1 (MQ=39)
                                                                                                                       gAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGAcc                               <  2:240880/147‑1 (MQ=39)
                                                                                                                        aaGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCa                              <  7:366807/147‑1 (MQ=39)
                                                                                                                           ccGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGa                           <  6:314427/147‑1 (MQ=39)
                                                                                                                            cGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGAt                          <  4:157421/147‑1 (MQ=39)
                                                                                                                             ggCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCa                        <  8:91236/148‑1 (MQ=39)
                                                                                                                               cAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGa                                                         <  6:92761/113‑1 (MQ=39)
                                                                                                                               cAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCaa                       <  7:178712/147‑1 (MQ=39)
                                                                                                                               cAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAAc                      >  8:274474/1‑148 (MQ=39)
                                                                                                                                aaaaCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACACCGAATCCGACGCCGGCTCAGACCACGATcc                        >  8:178712/1‑144 (MQ=255)
                                                                                                                                     ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc                                            >  4:229199/1‑120 (MQ=39)
                                                                                                                                     ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc                                            <  3:229199/120‑1 (MQ=39)
                                                                                                                                      cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCg                <  6:384750/147‑1 (MQ=39)
                                                                                                                                        gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGt              >  4:272013/1‑147 (MQ=39)
                                                                                                                                          gCAGCGTCGATTTCCAGACCCCGGCTAATGACGTCTAAAACACCGGTTCGACTGTCATTGTCACCATCGATAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGa           <  8:354040/148‑1 (MQ=11)
                                                                                                                                           cAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGa           <  6:60925/147‑1 (MQ=39)
                                                                                                                                           cAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGAt          <  7:33856/148‑1 (MQ=39)
                                                                                                                                               gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGcc       >  4:69375/1‑147 (MQ=39)
                                                                                                                                                    tttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac  >  3:114589/1‑147 (MQ=39)
                                                                                                                                                    |                                                                                                                                                  
TGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACG‑‑GC‑CAAACCATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACGCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCAC  >  NC_002947/196245‑196536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑