Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 4,735,320 C→T M105I (ATG→ATA sucA ← 2‑oxoglutarate dehydrogenase subunit E1

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,735,3200CT100.0% 197.0 / NA 57M105I (ATG→ATAsucA2‑oxoglutarate dehydrogenase subunit E1
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (30/27);  total (30/27)

TCTTTGCCGATGAACAGGTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGCATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTCGCGGATTGTCGAGTGC  >  NC_002947/4735177‑4735458
                                                                                                                                               |                                                                                                                                          
tctTTGCCGATGAACAGGTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTAt                                                                                                                                          <  5:386512/146‑1 (MQ=255)
tctTTGCCGATGAAAAGGTCGCCGGCACGGAAGGTCGTATCAAGATCCGCATTTGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCCACGGGTCGAGCTTGGCACCCAGATGGCCGCGtata                                                                                                                                         >  4:331503/1‑147 (MQ=255)
    tGCCGATGAACAGGTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACg                                                                                                                                       <  8:261271/145‑1 (MQ=255)
         attaaCAGGTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGcc                                                                                                                                <  5:197040/144‑1 (MQ=255)
              cAGGTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGa                                                                                                                            <  6:94545/146‑1 (MQ=255)
                ggTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCa                                                                                                                         >  5:103348/1‑147 (MQ=255)
                  tCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGt                                                                                                                       >  6:45315/1‑147 (MQ=255)
                  tCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGt                                                                                                                       >  5:330236/1‑147 (MQ=255)
                    gCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTTATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGc                                                                                                                    <  1:65168/148‑1 (MQ=255)
                     ccGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCg                                                                                                                     >  2:385632/1‑146 (MQ=255)
                     ccGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGc                                                                                                                    >  5:358410/1‑147 (MQ=255)
                        gCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGaa                                                                                                                <  2:407755/148‑1 (MQ=255)
                           cGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCa                                                                                                                   <  4:343927/142‑1 (MQ=255)
                           cGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCa                                                                                                                   >  3:343927/1‑142 (MQ=255)
                            ggAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACtt                                                                                                             <  6:330236/147‑1 (MQ=255)
                               aGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCaa                                                                                                          <  3:331503/147‑1 (MQ=255)
                                  tCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTg                                                                                                      <  1:7332/148‑1 (MQ=255)
                                             tCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCg                                                                                            <  6:103348/147‑1 (MQ=255)
                                                 cATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCCGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCCGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCCACCGGCTTCTTCTCgtgt                                                                                         >  6:275851/1‑146 (MQ=255)
                                                 cATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCgtgt                                                                                         >  6:170603/1‑146 (MQ=255)
                                                 cATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGAAGCCTGATGGACGCGTATACGATAGGCATGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCgtgt                                                                                         >  5:299567/1‑146 (MQ=255)
                                                   ttGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCgtg                                                                                          <  5:79290/143‑1 (MQ=255)
                                                   ttGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCgtg                                                                                          >  6:79290/1‑143 (MQ=255)
                                                                 gTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAAAGGGTCGAGCTTGGCACCCAGATGGCCGCGTATACGATAGGCCTGGTTCAGTCGCAGAACTTCAACCTGCTACTTCTCGTGTTCACTGCTCACGCTCCcg                                                                       >  1:346025/1‑148 (MQ=255)
                                                                     ttgatCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCcggcg                                                                    >  2:135964/1‑147 (MQ=255)
                                                                     ttgatCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCACGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCcggc                                                                     >  4:311656/1‑146 (MQ=255)
                                                                      tgatCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTcc                                                                         <  6:190761/141‑1 (MQ=255)
                                                                      tgatCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTcc                                                                         >  5:190761/1‑141 (MQ=255)
                                                                         tCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGaaa                                                                <  4:141124/147‑1 (MQ=255)
                                                                         tCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAAc                                                               >  1:312033/1‑148 (MQ=255)
                                                                            aCAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAAcc                                                              <  5:382823/146‑1 (MQ=255)
                                                                            aCAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCg                                                             <  5:45315/147‑1 (MQ=255)
                                                                             cAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGTTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCgg                                                            <  6:78357/147‑1 (MQ=255)
                                                                             cAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGt                                                           >  1:37938/1‑148 (MQ=255)
                                                                             cAGGTCTACGGGCGCAGGGAGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGt                                                           >  1:157027/1‑148 (MQ=255)
                                                                              aGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGt                                                           <  4:120594/147‑1 (MQ=255)
                                                                                 tCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCgt                                                                                           >  4:220801/1‑112 (MQ=255)
                                                                                 tCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCgt                                                                                           <  3:220801/112‑1 (MQ=255)
                                                                                 tCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGaaa                                                                <  7:16081/139‑1 (MQ=255)
                                                                                 tCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGaaa                                                                >  8:16081/1‑139 (MQ=255)
                                                                                     cgtgcgcAGGGCGCTGCCACAACCCCTACGGGTCGAGCTTGTCAGCCTGATGGCCGATTATACGATAGCGCTGGATCAGCCCGAGAAGTTCTACGTGCATCTTCTGGTGTTCACTGCTCACGATCCGGGCGGAAACGGGTTGtgctc                                                    <  2:231563/144‑3 (MQ=255)
                                                                                       ggCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGggcgcggc                                                 <  1:385632/148‑1 (MQ=255)
                                                                                         cgcAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGggcgcggcgc                                               >  7:207315/1‑148 (MQ=255)
                                                                                           cAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTg                                             >  7:231604/1‑148 (MQ=255)
                                                                                           cAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTg                                             <  2:312033/148‑1 (MQ=255)
                                                                                              ggCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTAACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGt                                           >  4:291601/1‑147 (MQ=255)
                                                                                                      cacaACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTg                                     <  4:365788/145‑1 (MQ=255)
                                                                                                      cacaACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGc                                    >  8:185052/1‑146 (MQ=255)
                                                                                                        caACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCcagc                                <  7:100288/148‑1 (MQ=255)
                                                                                                               aaCGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACg                          >  2:90594/1‑147 (MQ=255)
                                                                                                                 cGGGTCGAGCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGaa                        >  5:374119/1‑147 (MQ=255)
                                                                                                                         gCTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTcgc                >  6:358493/1‑147 (MQ=255)
                                                                                                                          cTTGGCAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTcgc                >  5:164596/1‑146 (MQ=255)
                                                                                                                               cAGCCTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTCGCGGttt           <  5:358493/146‑1 (MQ=255)
                                                                                                                                   cTGATGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTCGCGGATTGTCGAg     >  2:20651/1‑148 (MQ=255)
                                                                                                                                      aTGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTCGCGGATTGTCGAGTg   >  3:232729/1‑147 (MQ=255)
                                                                                                                                      aTGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTCGCGGATTGTCGAGTGc  <  8:207315/148‑1 (MQ=255)
                                                                                                                                      aTGGCCGCGTATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGAGCGGCGCTGGTTCATTGCCAGCAGTACGAAATGGTCGCGGATTGTCGAGTg   >  3:131837/1‑147 (MQ=255)
                                                                                                                                               |                                                                                                                                          
TCTTTGCCGATGAACAGGTCGCCGGCACGGAAGGTCGTATCAAGATCGGCATTGGTCAAGCCGTAGTGATTGATCGACAGGTCTACGGGCGCAGGGCGCTGCCACAACCCCAACGGGTCGAGCTTGGCAGCCTGATGGCCGCGCATACGATAGGCCTGGATCAGTCGCAGAACTTCAACCTGCTTCTTCTCGTGTTCACTGCTCACGCTCCCGGCGGAAACCGGTTGGGCGCGGCGCTGGTTCTTTGCCAGCAGTACGAAATGGTCGCGGATTGTCGAGTGC  >  NC_002947/4735177‑4735458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: