Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,740,816 | T→G | intergenic (+53/+700) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,740,816 | 0 | T | G | 98.0% | 167.9 / NA | 50 | intergenic (+53/+700) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base G (26/23); minor base C (0/1); total (26/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.80e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCAC > NC_002947/4740678‑4740952 | ccAGCCCGTACAAGATCGGCCGTACGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCGGAAAGACCGCAAGTAAGCTGCAGTAGCCGACCGCAAGAAGGCTGCCCTCGAGCCGCC‑TTTGTTATTTGTCATGTGcc > 6:315882/1‑147 (MQ=255) cAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg > 7:93281/1‑148 (MQ=255) agctagTACATGATCGGCCGTCCGCGCCAGCTGTACACCGTCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCTCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGATGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCgg < 5:315882/142‑1 (MQ=255) gTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCc‑‑tct > 6:148389/1‑147 (MQ=255) cAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTcgc < 8:93281/148‑1 (MQ=255) aaGATCGGTCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTcg < 6:179056/146‑1 (MQ=255) aaGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTcgc < 3:106750/147‑1 (MQ=255) aTCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGcc > 1:410518/1‑148 (MQ=255) ccGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCcgcg < 7:707/148‑1 (MQ=255) cgcgCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCcgcg < 2:410518/147‑1 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTAGCGGCCTTGCCcgc > 6:171722/1‑144 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGGCAAGGCCGCGAag < 6:25825/147‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGGCAAGGCCGCGAag < 5:148389/147‑1 (MQ=255) ccAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAagag > 7:175445/1‑148 (MQ=255) cTGGACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTACGCTGCACTAGCCGCACGCAAGACGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGGGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGcc < 3:84617/147‑1 (MQ=255) tGTACACGGGCGAGCATACGCGCGACATCGTTGCCCTGAAAGCCCGCAAGTACGCTGCAGTAGCCGACCGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCg < 6:348862/147‑1 (MQ=255) tACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTATCTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCg < 1:306179/146‑1 (MQ=255) acacCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTAGCGGCCTTTCCCGCGAAGAGGCCGGca > 2:132402/1‑147 (MQ=255) ccGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCATGCCCGCGAAGAGGCCGGccca > 5:141197/1‑146 (MQ=255) ataaGCGCGACATCGTTGCCCTCAACCCCCGAAATTAAGCTGCTGTAGCCGAACCCAAGAAGGCTGCCCTGGGGCAG‑CTTTTTTTTTTTGTCGTGTGCCGGCC‑‑TCTTCGCGGCGTGGCCCGCTAAGAGGCCGGCACAGACACCACaaa < 2:147423/146‑1 (MQ=255) aGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCGTGCCCGCGAAGAGGCCGGCCCCGCCACCCCcaaa > 3:387471/1‑146 (MQ=255) gcgACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGCACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCCGCC‑‑ACTTCCCGGCCATGCCCGCGAAGACGCCGCCCCAGACACCACAAAAccac > 3:48183/1‑145 (MQ=255) gcgACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAAcc > 6:209947/1‑145 (MQ=255) gcgACATCGTTCCCCTTAAAGCCCGCATGTAAGCTGCATTAGCCGAACGCATGATGGCTGCCCTGGGGATGCGTTTTTTT‑TTTGTCCTGTGCGGGCG‑‑TCTTCGCGGCGTTGCCCGGTATTAGGCCGGCACAGACACCACAAAACCTc < 6:141197/147‑1 (MQ=255) aTCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGc < 4:171337/91‑1 (MQ=255) aTCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGc > 3:171337/1‑91 (MQ=255) aTCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTAGCGGCCTTGCCCGCGAAGAGGGCGGCACAGACACCACAAAACCTCAGttt > 4:223621/1‑147 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCATAGCGGCCGTGCCCGCGCAGCGGGCGGCACAGACACCCCAAAACCACAGTTTTTGTacgccc > 1:415437/1‑148 (MQ=255) tGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcccg > 7:206380/1‑148 (MQ=255) tGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGAGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcccg > 1:106788/1‑148 (MQ=255) aaGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTc > 7:272067/1‑148 (MQ=255) ccGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCCTTATTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCAc < 1:132402/148‑1 (MQ=255) cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCGTGCCCGCGGAGAGGCCGGCACCGACACCACAAAAACTCAGTTTTTCTCCGCCCGCGCACGc > 4:235083/1‑147 (MQ=255) aGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TATTCGCGGCCTTGCCCGCCAAGAGGCCGGCACAGACACCACAAAACCACAGTTTTTCTCCGCCCGCTCACGCAccc > 2:348235/1‑147 (MQ=255) aGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGCCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTc < 1:139585/148‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAg < 7:81128/148‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAg < 7:43206/148‑1 (MQ=255) cTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑ACATAGCGGCCTTGCCCGCGAAGACGCCGGCACAGACACCACAAAACCACAGGTTTTATCCGCCCCCTCACGCACCCCattaa > 3:149676/1‑145 (MQ=255) tGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAg < 5:209947/147‑1 (MQ=255) aGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGc < 2:418417/70‑1 (MQ=37) aGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGc > 1:418417/1‑70 (MQ=37) cGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TATTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGCCACCACAAACCCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGaa > 6:95901/1‑147 (MQ=255) gAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTAGCGGCCTTGCCCGCGAAGAGGCCGGCCCAGCCACCACAAAACCTGCGTTTTTCTCCGCCCGCGAACGCAGCCCTTTCAGGGTTTTGAACg > 2:57146/1‑148 (MQ=255) aaCGCACGAAGGCTGCCCGCGGGCAGCC‑TTTTTTATTTCTCCTGTGCCGGCC‑‑GCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACgg < 8:110519/148‑1 (MQ=255) cGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGgc > 6:195357/1‑147 (MQ=255) agaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCCGCCGTGCCCGCGAAGCGGCCGGCACAGACCCCCCAAAACCACCGGTTTTCTCCGCCCGCTCACGCAGCCCTTTGAGGGTATTTAACGGCGCAt > 5:361903/1‑147 (MQ=255) ggCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATccacc < 8:272067/148‑1 (MQ=255) ggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTGACGCAGCCCTTTCAGGGTATTGAACGGCGCCTCCACCCCGAACttgt > 5:92585/1‑147 (MQ=255) cttttttttttGTCCTGTGCGGGCC‑‑GCTTCGCGGCGTTGCGCGCTATGAGGCGGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGcca < 4:48183/146‑1 (MQ=255) tttttATTTGTCCTGTGCCGGCC‑‑TCTGCGCGGCCTTGCCCGCTATGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGccac < 8:206380/146‑1 (MQ=255) | CCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCC‑‑TCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCAC > NC_002947/4740678‑4740952 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |