| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,460,551 | Δ1 bp | 6.1% | coding (914/1167 nt) | algJ ← | alginate O‑acetylase AlgJ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,460,551 | 0 | T | . | 6.1% | 260.6 / 10.2 | 82 | coding (914/1167 nt) | algJ | alginate O‑acetylase AlgJ |
| Reads supporting (aligned to +/- strand): ref base T (37/40); new base . (2/3); total (39/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.65e-01 | |||||||||||
ATTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCGG > NC_002947/1460404‑1460699 | aTTGGCAGATAACGTTCGGGGAATTCCCACACGACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCctgctg < 6:175994/149‑1 (MQ=255)aTTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCctgctg < 6:170329/149‑1 (MQ=255)aTTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCctgctg < 7:93590/149‑1 (MQ=255)aTTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCctgctg > 5:11744/1‑149 (MQ=255) ggCAGATAACGTTCGGGGAATTACCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAg > 7:110882/1‑149 (MQ=255) gCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgc > 4:253163/1‑149 (MQ=255) aGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgcga < 3:97062/149‑2 (MQ=255) gATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAgcgcg > 8:295713/1‑149 (MQ=255) cGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAg > 8:372643/1‑149 (MQ=255) gTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgcgacgtc > 1:260779/1‑141 (MQ=255) gTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGCAGCAGGCCCTGC‑GCAgcgacgtc < 2:260779/146‑6 (MQ=255) gTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAg > 6:255014/1‑148 (MQ=255) gTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAg > 6:333959/1‑148 (MQ=255) ggggAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAg < 8:94456/148‑1 (MQ=255) ggggAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGt > 8:44671/1‑149 (MQ=255) gggAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGtt > 8:343572/1‑149 (MQ=255) aaTTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCa < 7:343572/149‑1 (MQ=255) ccACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCg > 6:199113/1‑149 (MQ=255) ccACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCg > 7:352963/1‑149 (MQ=255) cacaCCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCgg < 6:11744/149‑1 (MQ=255) acacCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCggg > 6:133734/1‑149 (MQ=255) accaccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGtt > 8:81767/1‑149 (MQ=255) ccaccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTg < 1:17758/149‑1 (MQ=255) accacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGCGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGgc > 3:68028/1‑149 (MQ=255) ccacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGgcg < 7:70793/149‑1 (MQ=255) cacTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGgcgc > 5:225734/1‑149 (MQ=255) gtgCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCt < 4:215496/148‑1 (MQ=255) gggcggcgTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTg < 5:152174/147‑1 (MQ=255) gcggcgTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGt < 7:81767/149‑1 (MQ=255) ggcgTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGc < 5:246782/149‑1 (MQ=255) ttCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGAGGGTTGGCGCTGTAGCTGGTGCCTAc > 8:158866/1‑149 (MQ=255) ttCTTGAAGGCATCGCTTTGCAGGTACTTGAGCAGCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTAc < 8:266596/149‑1 (MQ=255) gAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCa < 1:90883/146‑1 (MQ=255) gAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCa < 3:253163/146‑1 (MQ=255) gAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGt < 5:132132/148‑1 (MQ=255) gAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGt < 4:65305/148‑1 (MQ=255) gAAGGCATCGCTTTCCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGACTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTg > 8:224765/1‑149 (MQ=255) aaGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGTCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTg < 7:372643/148‑1 (MQ=255) aaGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGc < 7:199972/149‑1 (MQ=255) gCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTg < 6:110437/132‑1 (MQ=255) gCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTg > 5:110437/1‑132 (MQ=255) cATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAAc < 8:263781/148‑1 (MQ=255) aTCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAAccc > 1:338641/1‑148 (MQ=255) aTCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCg > 3:79314/1‑149 (MQ=255) cAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGc < 5:45133/148‑1 (MQ=255) cAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGc < 6:225734/148‑1 (MQ=255) cAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGc < 4:79314/148‑1 (MQ=255) cAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGc < 7:44671/148‑1 (MQ=255) aGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCtt > 2:342494/1‑149 (MQ=255) aGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCtt < 8:2070/149‑1 (MQ=255) ggTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTg < 7:295713/149‑1 (MQ=255) cTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCgg > 4:118022/1‑149 (MQ=255) ttGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGc > 2:247704/1‑149 (MQ=255) cATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCg < 7:7288/128‑1 (MQ=255) cATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCg > 8:7288/1‑128 (MQ=255) ggCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAAcgc > 6:383882/1‑149 (MQ=255) ggCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAAcgc < 8:352963/149‑1 (MQ=255) ggCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAAcgc > 7:43457/1‑149 (MQ=255) gcGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCg < 5:383882/149‑1 (MQ=255) gggCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGc < 4:248546/149‑1 (MQ=255) gCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCg > 7:253831/1‑113 (MQ=255) gCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCg < 8:253831/113‑1 (MQ=255) ggCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTGCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCAccc > 6:276687/1‑149 (MQ=255) ggCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCAccc > 8:54893/1‑149 (MQ=255) ccGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTc < 7:71476/149‑1 (MQ=255) cGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCg < 2:271542/149‑1 (MQ=255) ttCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCAt > 1:210521/1‑149 (MQ=255) ttCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCAt > 4:177849/1‑149 (MQ=255) gTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCTAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAccggc < 7:158866/148‑1 (MQ=255) ggCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAccggccgg < 2:210521/148‑1 (MQ=255) ggCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAccggccgg < 5:199113/148‑1 (MQ=255) ggCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCggg > 8:111653/1‑149 (MQ=255) ggCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCggg > 6:37344/1‑149 (MQ=255) gACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAccggc < 6:179353/142‑1 (MQ=255) gACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGAccggc > 5:179353/1‑142 (MQ=255) gACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGggtgg > 7:224045/1‑149 (MQ=255) gTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGc > 3:166836/1‑149 (MQ=255) cGCTGCAGCAGGCCCTGC‑GCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGaacaa < 7:304043/103‑1 (MQ=255) cGCTGCAGCAGGCCCTGC‑GCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGaacaa > 8:304043/1‑103 (MQ=255) cTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGGAAGCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCAGCGACCGGCCGGGTGGTGCGttt < 8:110882/149‑1 (MQ=255) tGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCAGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTc > 8:164733/1‑149 (MQ=255) gcAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGc < 5:333959/149‑1 (MQ=255) cAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCa < 3:177849/149‑1 (MQ=255) aGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTGGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAg < 4:68028/149‑1 (MQ=255) gggCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGGAGCTGGCGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAgg < 5:133734/149‑1 (MQ=255) ccTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACCACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTg > 5:371973/1‑149 (MQ=255) tgcAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCgg > 2:120155/1‑149 (MQ=255) | ATTGGCAGATAACGTTCGGGGAATTCCCACACCACCACTTGTGGTGCGGCGTTCTTGAAGGCATCGCTTTGCAGGTACTTGAGCATCGGCAGCAGCGGGCCATGGCCGTCTTCGGCGTAGTTGGCGACGTCGCTGC‑GCAGGGCCTGCTGCAGCGCGCCAAGGAAGTTCCAGTGCGGGTTGGCGCTGTAGCTGGTGCCTACCAGTGCAACCGGGATCTGCTTGTCGGCGAACAACGCGTCGCCGGCGTCACCCTCGGCATCGACCGGCCGGGTGGTGCGTTTCTGCAGGTTGTCCGG > NC_002947/1460404‑1460699 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |