Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,740,805 Δ1 bp 100% intergenic (+42/+711) gltA → / ← yeiW citrate synthase/putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,740,8050T.100.0% 153.7 / NA 35intergenic (+42/+711)gltA/yeiWcitrate synthase/putative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (18/17);  total (18/17)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTG  >  NC_002947/4740660‑4740944
                                                                                                                                                  |                                                                                                                                           
aCTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCtttt                                                                                                                                          <  7:47854/149‑1 (MQ=255)
 cTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCGAGGGCAGCcttctt                                                                                                                                         <  8:8750/149‑1 (MQ=255)
    gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat                                                                                                                                      >  6:186208/1‑147 (MQ=255)
    gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat                                                                                                                                      >  8:228678/1‑147 (MQ=255)
    gaaagaaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCtttttta                                                                                                                                       <  8:312542/148‑2 (MQ=255)
         aaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTCCACCGGCGAGCAGAAGCGCGCCATCGT‑TGGGCTGAAAGACCGGATGTACGGTGCAGTAGCCGAACGCAAGAAGGCTGCGCGGGGGCAGCCttttttgtttgtc                                                                                                                                 >  4:277047/1‑142 (MQ=255)
         aaaTGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttatttgtc                                                                                                                                 <  8:219370/149‑8 (MQ=255)
                 tcCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCg                                                                                                                        >  8:241202/1‑149 (MQ=255)
                      cccGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGcca                                                                                                                    >  1:336633/1‑147 (MQ=255)
                          tACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTGTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTc                                                                                                                >  1:305165/1‑149 (MQ=255)
                            cAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgcg                                                                                                             <  7:228678/149‑1 (MQ=255)
                             aaGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCgg                                                                                                            <  3:307494/149‑1 (MQ=255)
                                   ggCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGc                                                                                                      <  2:153953/149‑1 (MQ=255)
                                      cGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCCGCCTATTAGCGGCCAGGCCcg                                                                                                   >  7:127070/1‑149 (MQ=255)
                                       gTCGGCGCCAGCTGTACACCGGCGAGCAGTAGCGCGACATCGT‑TGCCCTGAAAGACCGCTAGTAAGCTGCAGTTGCCGATCGCAAGTAGGCTGCCCTCGGGCATCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCcgc                                                                                                  <  1:318289/149‑1 (MQ=255)
                                        ccgctgtcAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCTTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCcgc                                                                                                  <  1:142361/141‑1 (MQ=255)
                                         ccGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCcgcg                                                                                                 >  3:169760/1‑148 (MQ=255)
                                         ccGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGa                                                                                                <  5:186208/149‑1 (MQ=255)
                                          cgcgCCAGCTGTACAGCGGCGAGCTGAAGCGCTACATCGT‑TGCCCTGAAAGACCGCAAGTAATCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGaa                                                                                               <  7:342508/149‑1 (MQ=255)
                                          cgcgCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGaa                                                                                               <  2:14455/149‑1 (MQ=255)
                                           gcgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCACTTGGCGGGCGTGGCCGCGGag                                                                                              >  3:389997/1‑149 (MQ=255)
                                             gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAagag                                                                                            <  7:324769/149‑1 (MQ=38)
                                             gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAagag                                                                                            <  5:263463/149‑1 (MQ=38)
                                             gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAagag                                                                                            <  7:189829/149‑1 (MQ=38)
                                             gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAAGGCCGCGAagag                                                                                            <  1:181487/149‑1 (MQ=38)
                                             gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAagag                                                                                            <  6:99840/149‑1 (MQ=255)
                                                       cacCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat                                                                                                                                      <  4:356604/98‑3 (MQ=255)
                                                       cacCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCttttttat                                                                                                                                      >  3:356604/1‑96 (MQ=255)
                                                              gAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCACTTCGCGGCCATGGCCGCGAAGAGGCCGGCACAGAcaccc                                                                            >  1:210464/1‑147 (MQ=38)
                                                                           aCATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCATGCCCGCGAAGAGGCCGGCACAGACACCACCAAACCGCAGgtt                                                              >  8:9970/1‑149 (MQ=38)
                                                                                 t‑tGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCGTGCCCGGGAAGAGGGCGGCACCGACACCACAAAACCCGAGgttttgtac                                                        >  3:36050/1‑145 (MQ=255)
                                                                                                cGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCCCAGACACCACAAAACCTCAGTGTTTCTCCGCCCGCTCACGCAg                                          >  2:96651/1‑149 (MQ=255)
                                                                                                  cAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGcc                                        >  4:359309/1‑149 (MQ=255)
                                                                                                     gTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGcccgt                                     >  3:76482/1‑147 (MQ=255)
                                                                                                      tAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTAGCGGCCTTGCCCCCGAAGAGGCCGGCACAGACACCACAAAACCAAAGTTTTTATCCGCCCGCTAACGCAGcccat                                     >  4:335352/1‑146 (MQ=255)
                                                                                                                   ccGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAAc                       >  4:64483/1‑149 (MQ=255)
                                                                                                                   ccGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAAc                       >  8:276592/1‑149 (MQ=255)
                                                                                                                     gAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGCCACCACAAAACCTCAGTTTTTATCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACgg                     >  7:159514/1‑149 (MQ=255)
                                                                                                                       aCGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGgcg                   >  1:242255/1‑149 (MQ=255)
                                                                                                                        ataaaaaagGCTGCCCGAGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGgcg                   >  6:364790/7‑148 (MQ=255)
                                                                                                                           aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcc                                                     <  6:100129/111‑1 (MQ=39)
                                                                                                                           aagaagGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATc               <  2:305165/149‑1 (MQ=255)
                                                                                                                                          gggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttg  <  4:169760/147‑1 (MQ=255)
                                                                                                                                          gggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttg  <  7:276592/147‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                           
ACTGGAAAGAAATGCTCTCCAGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGT‑TGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTG  >  NC_002947/4740660‑4740944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑