| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,323,625 | Δ1 bp | 6.6% | coding (259/1563 nt) | PP_4684 → | kinase‑like domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,323,625 | 0 | A | . | 6.6% | 239.0 / 10.4 | 76 | coding (259/1563 nt) | PP_4684 | kinase‑like domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (34/37); new base . (3/2); total (37/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.95e-01 | |||||||||||
ATACGCCTACAAGATCAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCA > NC_002947/5323477‑5323770 | aTACGCCTACAAGATCAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTa < 7:48821/149‑1 (MQ=255) cTACAAGATCAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTc > 3:24653/1‑148 (MQ=255) tACAAGATCAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGa > 3:174203/1‑149 (MQ=255) aTCAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑Acc > 3:125350/1‑149 (MQ=255) tCAAGAAACCGCTGAATTTCGGCTTCCTGGTCTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGTCGC‑Acc < 6:59797/148‑1 (MQ=255) cAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCg > 5:157594/1‑148 (MQ=255) aaCCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCg > 6:157770/1‑143 (MQ=255) cGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGAc > 5:4414/1‑134 (MQ=255) cGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGAc < 6:4414/134‑1 (MQ=255) cGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGt < 2:224207/149‑1 (MQ=255) cGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGt < 7:51875/149‑1 (MQ=255) cGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGt < 3:231475/149‑1 (MQ=255) cGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGt < 1:187556/149‑1 (MQ=255) gATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTg > 2:174914/1‑149 (MQ=255) tGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCTGCGGT‑GCGTCGACGCTACCGGTGATCggcaac < 3:187726/149‑5 (MQ=38) aTTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGaa < 1:20840/149‑1 (MQ=255) tttCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAg < 6:55109/149‑1 (MQ=255) tCGGCTTCCTGGACTTCCCCGGACTGGACCAGCGCCAACATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAgg < 2:319588/148‑1 (MQ=255) gCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTg > 7:93525/1‑147 (MQ=255) gCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGaa < 6:157594/149‑1 (MQ=255) gACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGa < 2:290125/149‑1 (MQ=255) gACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGa < 7:195395/149‑1 (MQ=255) cTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAg < 2:366606/140‑1 (MQ=255) cTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAg > 1:366606/1‑140 (MQ=255) cTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAAATGCGCCTGAACCAACGCCTGCCCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGt < 1:244871/149‑1 (MQ=255) ttCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTa > 3:231257/1‑149 (MQ=255) cACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTAt < 5:157770/148‑1 (MQ=255) ccGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTc < 2:292409/104‑1 (MQ=255) ccGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTc > 1:292409/1‑104 (MQ=255) gACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGa < 4:231257/148‑1 (MQ=255) ccAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGCTGAAGCCATCGAGTATGTGCTGAACATGCGCCact > 4:46924/1‑147 (MQ=255) cAGCATTTCTGTAACGAAGAATGGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCCCCAGtg > 7:248285/1‑148 (MQ=255) tGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAggg > 3:200701/1‑149 (MQ=255) tAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAgg < 4:138191/146‑1 (MQ=255) tAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAgg < 6:336708/146‑1 (MQ=255) aaCGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGTTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGcc < 6:84475/148‑1 (MQ=255) aaCGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAgg > 6:66886/1‑145 (MQ=255) aaCGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGcc > 5:84475/1‑148 (MQ=255) aaCGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGGGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAgg < 5:66886/145‑1 (MQ=255) aCGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTgg < 2:161968/94‑1 (MQ=255) aCGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTgg > 1:161968/1‑94 (MQ=255) cGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGc > 4:350846/1‑145 (MQ=255) gaagaaTTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGAt > 2:229005/1‑149 (MQ=255) tagaaTTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTAtgtg < 2:158164/115‑1 (MQ=255) aagaaTTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTAtgtg > 1:158164/1‑116 (MQ=255) aTTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTc < 1:174914/148‑1 (MQ=255) aTTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCa < 6:248305/149‑1 (MQ=255) gcgcCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAaca > 1:146852/1‑149 (MQ=255) gcCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACAcc < 4:125350/149‑1 (MQ=255) gcCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACAcc < 1:229005/149‑1 (MQ=255) tGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTCGCGCAGGTGCAGCCATCCATTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTg > 1:325379/1‑149 (MQ=255) aaCCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGGTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGc < 6:386125/148‑1 (MQ=255) ccAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAgg < 4:200701/149‑1 (MQ=255) cAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGc > 1:372882/1‑149 (MQ=255) gCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAAt < 2:372882/149‑1 (MQ=255) cTGACCGAAGGCCTGCACCTGGAAGTGTTGCCGATCACCGGCAGCGCCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATgg < 8:248285/149‑1 (MQ=255) ccGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGaa < 3:340089/149‑1 (MQ=255) cGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGGAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAAc < 4:35058/149‑1 (MQ=255) aaGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTg > 4:367560/1‑149 (MQ=255) ggCCTGTACCTGGAAGTGTTGCCGATCACCGGTATCGGCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGaa < 3:46924/149‑1 (MQ=255) ccTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGaaa > 7:244411/1‑147 (MQ=255) cTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGc > 5:195153/1‑149 (MQ=255) cTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGc > 1:137589/1‑149 (MQ=255) cTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACGGCAGATCGGTGGCGAAGGTGCAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTAAACACCCGGCAGGCCAATGGCGAACTGAACGCCgcgcg > 8:60774/1‑148 (MQ=255) cTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGca > 6:22846/1‑149 (MQ=255) ggAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGcaca > 6:384085/1‑149 (MQ=255) aaGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATc > 7:263919/1‑149 (MQ=255) caccGATCTGCGGT‑GCGTCGACGCTACCGGTGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACg > 2:266266/3‑137 (MQ=38) caccGATCTGCGGT‑GCGTCGACGCTACCGGTGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACg < 1:266266/135‑1 (MQ=38) caccGATCTGCGGT‑GCGTCGACGCTACCGGTGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGAc > 3:140390/3‑146 (MQ=38) gCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAg < 2:146852/148‑1 (MQ=255) accGATCTGCGGT‑GCGTCGACGCTACCGGTGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGAc > 2:22261/2‑145 (MQ=38) cGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATg < 3:367560/149‑1 (MQ=255) cGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATg > 3:194076/1‑149 (MQ=255) aTCACCGGTAGCGTAGACGC‑ACCGCAGATCGGTGGCGAACGTGAAGACATAGAGTATGTGCTGAAGATGCCCCAGTTACCCCAGGGCCAGATGCTAAACACCCTTCAGGCCAATGGCGAACTGAACGCAACGCACATACACCAGATgga > 5:357556/1‑148 (MQ=255) cGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCgg > 3:170089/1‑148 (MQ=255) ggTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCa < 3:113469/149‑1 (MQ=255) | ATACGCCTACAAGATCAAGAAACCGATGAATTTCGGCTTCCTGGACTTCACCGGACTGGACCAGCGCCAGCATTTCTGTAACGAAGAATTGCGCCTGAACCAACGCCTGACCGAAGGCCTGTACCTGGAAGTGTTGCCGATCACCGGTAGCGTCGACGC‑ACCGCAGATCGGTGGCGAAGGTGAAGCCATCGAGTATGTGCTGAAGATGCGCCAGTTCCCCCAGGGCCAGATGCTCAACACCCTGCAGGCCAATGGCGAACTGAACGCCACGCACATCGACCAGATGGCCCGGCA > NC_002947/5323477‑5323770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |