| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,070,246 | 1 | . | G | 93.4% | 181.8 / 7.4 | 61 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base G (33/24); total (34/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.98e-01 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
| * | NC_002947 | 1,070,246 | 2 | . | A | 93.4% | 185.3 / 7.2 | 61 | intergenic (+46/+96) | aroP‑I/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| Reads supporting (aligned to +/- strand): ref base . (1/3); new base A (33/23); total (34/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.07e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.88e-01 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAAC > NC_002947/1070098‑1070384 || ccTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑t‑‑gt < 7:268744/149‑1 (MQ=255) cTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑t‑‑gt > 3:276840/1‑148 (MQ=255) gACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGTTATGCCGTTAGGTTTTCGGCGC‑C‑‑t‑‑gt > 5:145940/1‑146 (MQ=255) gccgccGATTCGCTTCTCGGTAATGCTGATCCCGGCATGGATCTCTGTGCTGTGGGTGGCTTTCAAGCTGATGAAGGGTCGCCAGTCCAAGGGCTGATGGGGTTTGTTCGTAAGGGGTATGCGGTTAGGTTTTCGGCGC‑G‑‑T‑‑GT‑‑Gagatc < 1:155850/149‑5 (MQ=255) ccgccgATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑t‑‑gt > 7:257779/1‑142 (MQ=255) aTTCGCATCTCGGTAATTCTGATCCCGTCATGGATCGCTGTTCTGTGGGTGGCTTTCAAGCTGATGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGcgcc < 4:296013/149‑1 (MQ=255) cGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCcgcg > 5:302035/1‑149 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCcgcgc > 3:314265/1‑149 (MQ=255) gCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCcgcgc > 3:138649/1‑149 (MQ=255) tcGTTAATGCTGATCGCGTCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCTCCAGGCGAATGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCgcgtgcg < 8:80369/149‑1 (MQ=255) ggTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGggcggc > 5:131413/1‑149 (MQ=255) aaTGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGACAGACCCCCGGGCGGCGCt > 1:56699/1‑149 (MQ=255) gCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGa > 7:352580/1‑149 (MQ=255) gCTGATCCCGGCATGGATCGCTGTGCTGTGGCTGGCTTTCAACAAGAAGAAGGCTCGCCAGGCCAACGGCTGAACGGGTTTGTTCGTAAGGGGTATGCCGTTAGCTTTTCGGCGC‑CAGT‑‑GA‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGa > 2:226921/1‑149 (MQ=37) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGa > 2:293619/1‑148 (MQ=255) cTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGa < 1:293619/148‑1 (MQ=255) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTGGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAtc > 5:336150/1‑149 (MQ=255) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCCCGCGCGGCGCTc < 5:21450/145‑1 (MQ=38) tGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCCCGCGCGGCGCTc > 6:21450/1‑145 (MQ=38) ggCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAgg < 7:76268/149‑1 (MQ=255) cATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGc > 4:300076/1‑148 (MQ=255) cATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCg < 3:300076/149‑1 (MQ=255) agggAGCGCTGTGCTGGGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGTGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGa < 8:352580/147‑1 (MQ=38) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAtctc < 4:391486/137‑1 (MQ=255) aTCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGAtctc > 3:391486/1‑137 (MQ=255) tgctgtgGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaa < 3:47177/149‑1 (MQ=255) ctgggGGGGGCTTTCAAGCTGATGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCGGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCTAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTaaa < 2:173464/148‑1 (MQ=37) ggggtggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGCGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGc < 8:257779/147‑1 (MQ=255) gtggCTTTCAAGCTGAATAAGTCTCGCCAGGCCATTGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGc < 2:56699/149‑1 (MQ=38) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCg > 7:356641/1‑149 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCg > 5:116790/1‑149 (MQ=255) tggCTTTCAAGCTGAAGAAGGCTCGCCAGGCAAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCAGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTAACAGGCGATGAAAGCCTAAAGGCATGCg > 6:163831/1‑149 (MQ=38) tttCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTg > 2:274748/1‑149 (MQ=255) aaGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTggcg < 6:223276/148‑1 (MQ=255) tGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGATTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCt > 1:111403/1‑149 (MQ=255) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGCTCTCCCCGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCGGAcgcggt > 7:353581/1‑147 (MQ=38) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGtt < 6:302035/149‑1 (MQ=255) gCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGCGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGTCGGCCCTGACGCGtt > 7:261379/1‑149 (MQ=38) gCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc > 4:28134/1‑149 (MQ=255) gCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCCCCGCGAGGGCGGCGCTCGATCTCACACGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc > 4:257212/1‑149 (MQ=39) gCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GT‑‑GAGCTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTcccc < 8:334577/149‑1 (MQ=255) cAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCtt < 1:274748/149‑1 (MQ=255) gCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATATCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCa > 7:333642/1‑149 (MQ=255) ccAAGTGCTGATCGGGTTTGTTCGTAAGGGGTATTCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGGCTGGCGGCGCTGACGCGTTCCCCTTCCAt < 6:131413/149‑1 (MQ=38) cAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATg > 1:302981/1‑149 (MQ=255) gggCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGccc < 4:276840/149‑1 (MQ=255) aTCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGGCTGGCGGCCCTGACGCGGTCCCCGTCCATGCCCCTCCAt > 4:45837/1‑149 (MQ=38) tCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtg > 7:132448/1‑149 (MQ=255) tCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtg < 3:28134/149‑1 (MQ=255) gTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctgc > 2:319302/1‑149 (MQ=255) tttGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAAtgctgc > 2:266503/1‑148 (MQ=255) gTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc > 4:260844/1‑149 (MQ=255) gTTCGTAAGGCGTATGCCGTTAGGTTTTCGGCGC‑C‑‑TGGGA‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTc < 2:305565/148‑1 (MQ=38) ttCGTAAGGGTTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc < 6:145940/148‑1 (MQ=255) ttCGTAAGGGGTATGCCGTTAGGTTTTCGGCGCTC‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTcc > 1:251137/1‑149 (MQ=38) gTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATCATGCCTCcccc > 6:157435/1‑148 (MQ=38) ggggTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATGTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgca > 3:200004/1‑149 (MQ=255) gggTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAgcac < 8:132448/149‑1 (MQ=255) cGTTAGGTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAgtg < 8:356641/149‑1 (MQ=255) tttAGGCTTTCATCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCCCGCGCGGCGCTCGCTCTCACAGGCGCTGCAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTGCCATGCCCCGCAATGCTGCCTCCGCCAAGCACGCACAgtgg > 5:386267/2‑149 (MQ=21) gTTTTCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGAGCCGCGAGGGATGCGCTCGATCTCACATGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCAACTTACATGCACCTCAATGCTGCCACCGCCAAGCACGCACAGTGGTGTa > 4:107516/1‑148 (MQ=255) tCGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCTCCGCGCGGGGGGCGCTCGATCTCAGAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCAGGCACAGTGGTGTACAGc < 8:261379/148‑1 (MQ=255) cGGCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCaa > 4:90842/1‑149 (MQ=255) ggCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAac < 4:314265/149‑1 (MQ=255) ggCGC‑C‑‑T‑‑GTGAGA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAac < 4:138649/149‑1 (MQ=255) || CCTGACGCCGCCGATTCGCATCTCGGTAATGCTGATCCCGGCATGGATCGCTGTGCTGTGGGTGGCTTTCAAGCTGAAGAAGGCTCGCCAGGCCAAGGGCTGATCGGGTTTGTTCGTAAGGGGTATGCCGTTAGGTTTTCGGCGC‑C‑‑T‑‑GT‑‑GA‑‑TCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGATGAAAGCCTAAAGGCATGCGTCTGGCGGCCCTGACGCGTTCCCCTTCCATGCCCCTCAATGCTGCCTCCGCCAAGCACGCACAGTGGTGTACAGCAAC > NC_002947/1070098‑1070384 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |