| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 94.1% | 153.7 / 3.2 | 51 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (1/2); new base A (22/26); total (23/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCG > NC_002947/278595‑278883 | aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGt < 8:101749/148‑1 (MQ=255)aTGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGt < 4:17804/148‑1 (MQ=255) tCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑aaa < 2:391277/148‑2 (MQ=255) gCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAAATAAATTTTTGAATTATTTATAGAAGGGGGATTTTTTAAACAGTTGCCGGGATCTACGCGGTT‑AA‑accc > 2:309547/1‑148 (MQ=255) gCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATGGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTcc > 5:397585/1‑148 (MQ=255) gATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑Gctactaaa > 3:183354/1‑147 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATg > 1:359197/1‑149 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATg > 3:205982/1‑149 (MQ=255) gACAGACGTGTGCTGGTCCGGTGGTACGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGTGGGATTTGTTACAGAGGTGCCGCGCTCTTCGCGGGTAAA‑CCA‑GATCCTACACACATg > 3:38538/1‑149 (MQ=255) aGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCt < 6:209442/149‑1 (MQ=255) cGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCaa < 8:345416/149‑1 (MQ=255) tgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATc > 7:369047/1‑149 (MQ=255) cTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCt < 2:350747/148‑1 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTc > 1:267774/1‑140 (MQ=255) tggtccggtggtccggTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTc < 2:267774/140‑1 (MQ=255) gtccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCtgt < 1:58138/147‑1 (MQ=255) cggtggtccggtATATATAACCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCAGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACt < 8:369047/149‑1 (MQ=255) gtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGt < 1:262351/149‑1 (MQ=255) tggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 7:130711/149‑1 (MQ=255) gtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAg < 8:226463/148‑1 (MQ=255) ctgtATATATAACCTAATGATTTAAAAAATTTTTATTAACTAACTTTTTGGAATATTTATAGAAGGCGGAGTTGTTACAGAGGGGCCGGGCTCTTCGCTGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGc < 4:38538/147‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 5:232563/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 6:219028/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCggg < 4:205982/149‑1 (MQ=255) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCATCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCTAGATCTGTGCACTGTAGGAGCggg < 5:277529/149‑1 (MQ=255) cccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 6:397585/148‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCcgc > 2:58085/1‑149 (MQ=255) aTTTAAAAAATTTTTATTAACTAACTTTTTGTAATATTTATAGATGGGGTTTTTTTTACAGTGGTGCGGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAATATCTGTGCACTGTCGGAGGGGTTTTACCCGCGAAAgg < 2:147620/148‑1 (MQ=255) tataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGcc > 6:330217/1‑148 (MQ=255) tataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGcc < 5:330217/148‑1 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTAGCGGGTAAA‑CAC‑GCTCCTACACACATGACTCAAGATCTTTGCACTGTAGGATAGGGTTTACCAGAGAAAGGGCCgg > 3:325328/1‑148 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGaa > 8:302973/1‑149 (MQ=255) aaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑AAC‑GCTCCTACACACATGCCTAAAGATCTGTGCACTGAAGGAGCCGGTTTAACCGCGAAACGGCCGGcaca > 3:28196/1‑149 (MQ=255) aTTTTTTTTAAATTACTTTTTGTAATATTTATAGATGTGGTATTTTTAACTGAGTTGCGGGGGTCTTCGGGGGTAAA‑CCG‑GCTCGTAAAAACATGCCTAATTATTGGTCTAGTGTTGTTGGGGTTTAACCCGCGAAAGGGCCGGAACAg < 6:12950/149‑1 (MQ=255) tATGAACTAACTTTTTGTAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑ttt < 6:378043/148‑1 (MQ=255) actaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACCGCGGGGCCGGGCTCTTCGCGGGT‑AACCCC‑GCTCCTACACACATGCCTCAACATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCgg < 2:359197/149‑1 (MQ=39) ctTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTGCTACACACATGGCGCAAGATCTGTGCACTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTTCTCGGAGGcc > 6:351221/1‑149 (MQ=38) aaTATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CAC‑GATCCTACACACATGCCTCAAGATATGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTccc > 1:344364/1‑149 (MQ=39) atatTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCg < 6:159955/149‑1 (MQ=255) aaGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACCCATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc > 2:132550/1‑149 (MQ=255) ggtgATTTGTTACTGAGGTGCCGGGCTCTTGGCTGGTAAA‑CCC‑GCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCa < 4:325328/146‑1 (MQ=38) ggggATTTGTTACTGAGGTGCGTGGCTGTTCGCGGGTAAA‑CCC‑GCTCATACACACTTGCGTAATTATCTGTGCACTGTCGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 4:28196/146‑1 (MQ=255) gggATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TATACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCaa < 1:58085/149‑1 (MQ=255) gTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGa > 2:320958/1‑115 (MQ=255) gTTACAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGa < 1:320958/115‑1 (MQ=255) aCAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCGCAAGATGTGTGGACTGTAGGAGCGGGGTTGCCCGCGCAAGGGGCGGGACAGG‑GTTACTGGGGGGCCGCCGTGCCGGGGGACTTGGGCAAGAGCTGCggc > 4:108913/1‑149 (MQ=255) aCAGAGGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑CCTCCAACACACATGCCTCAAGATATGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCCCAGTCCCGACGAACTTGCGCAAGAACGGcccc > 4:157207/1‑147 (MQ=38) agagGTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgcg > 3:45931/1‑148 (MQ=255) gTGCCGGGCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGc < 7:302973/149‑1 (MQ=255) gggCTCTTCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttc > 1:61500/1‑149 (MQ=255) ttggcgGGT‑AA‑CCCGGTTCTTATACACTTGCCTCATTATCTGTGATGTGTTGGTGTTGTTTTTCCGGCGAAAGGGGCGGATGAGG‑TTTACTCGGAGGCCGCAGTGCCGAGGATGTTGCGCAATAACTGCCTCGTACTCTCTTTCTTCg < 4:183354/145‑1 (MQ=255) ttCGCGGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACAGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCACTTCCTTCgg > 2:80776/1‑149 (MQ=255) ggcgGGTAAA‑CCC‑GCTACTACACCCATGCCTCAATTTTTTTGCAATTTTGTCCGGGGTTTAACCGCGTAATGGCCGGAAAAGGTTTTTCTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCg < 1:309547/146‑1 (MQ=255) cgcgGGTAAA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGgcg > 5:144156/1‑149 (MQ=255) | ATGTCGCTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGT‑AA‑CCC‑GCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGG‑TTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCGGCG > NC_002947/278595‑278883 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |