New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1267198 =	58 (0.910)	8 (0.140)	7/248	NT	13.3%	coding (790/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP
	?	NC_002947	1267237 =	50 (0.840)					coding (751/2442 nt)	quiP	acyl‑homoserine lactone acylase QuiP

TTGCTGCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1267354‑1267198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcggccaGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTTCT  >  NC_002947/1267237‑1267383                                                                                                                                                                                                                                                                                                                  TTGCTGCGCGGGGCCCGGGACGAGGCGTTGGCCGAAATGGAAGTGGAGAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGG                                                                                                                                                             <  2:198054/149‑1   GCTGCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGG                                                                                                                                                            <  5:259374/148‑1    CTGCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGGTC                                                                                                                                                          <  7:230106/149‑1    CTGCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGGT                                                                                                                                                           <  1:130834/148‑1      GCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGG                                                                                                                                                        <  8:311238/149‑1      GCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCAGGGccag                                                                                                                                                        >  5:212190/1‑145       CCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGG                                                                                                                                                        <  3:304474/148‑1               CCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGG                                                                                                                                                             >  4:121169/1‑135               CCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGG                                                                                                                                                             <  3:121169/135‑1                                                                                                                 cagctCTGCCCGACCGCGCCCTGCTCGGTCGCCGGGGGGCGGCCAGCTTCTGGCTGGCCCCCGCCAGGGCGGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGG                                             <  6:65673/144‑1                                                                                                                       TGGCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGG                                             >  5:65673/1‑143                                                                                                                         GCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGG                                     >  5:376203/1‑149                                                                                                                         GCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAAC                                                         <  5:99095/129‑1                                                                                                                         GCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAAC                                                         >  6:99095/1‑129                                                                                                                          CCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGG                                     >  3:299955/1‑148                                                                                                                              CCTCGACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGC                                 >  8:141809/1‑148                                                                                                                                  GACCTGCTCGGTAGCCCGGGGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAAC                              <  7:141809/147‑1                                                                                                                                                     GGTCGGCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCG         >  6:95786/1‑149                                                                                                                                                          GCCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTT    <  6:376203/149‑1                                                                                                                                                          GCCAGCTTCTGGCTGGCAGCCGCCAAGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTT    <  7:61236/149‑1                                                                                                                                                           CCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTTC   >  5:303238/1‑149                                                                                                                                                           CCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTTC   >  6:72922/1‑149                                                                                                                                                           CCAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATATCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTTC   >  3:209435/1‑149                                                                                                                                                            CAGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTTCT  <  5:95786/149‑1                                                                                                                                                                                                                                                                                                                  TTGCTGCCCGGGGCCCCGGACGAGCCGTTGGCCGAAATGGAAGTGGACAAGCTCAAGGGCCTGAACCTGGCCAGCCAGTTGCCGGGGCTGCCAGCCCTGGCGGCTGCCAGCCAGAAGCTGGCCGACCTCGACCTGCTCGGTAGCCCGGGGTCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1267354‑1267198 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcggccaGCTTCTGGCTGGCAGCCGCCAGGGCTGGCAGCCCCGGCAACTGGCTGGCCAGGTTCAGGCCCTTGAGCTTGTCCACTTCCATTTCGGCCAACGGCTCGTCCGGGGCCCCGGGCAGCAACCAGGCCAGCTTGTCGCTACCGGCTTTCT  >  NC_002947/1267237‑1267383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.