| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1426319 = | NA (NA) | 3 (0.050) | 3/254 | NT | NA | coding (217/1422 nt) | PP_1250 | group II intron‑encoding maturase |
| ? | NC_002947 | 1426367 = | NA (NA) | coding (265/1422 nt) | PP_1250 | group II intron‑encoding maturase | |||||
CCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1426472‑1426319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgacTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCC > NC_002947/1426367‑1426514 CCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTG < 2:196733/149‑1CCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTAAGCGACCGTCATGCCATCGGCACCCCGGGCTCCCGTGTTG > 2:137277/1‑149 GCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCTGCACCCGGTGCTCCCTTGTTGCT > 8:98683/1‑148 CGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTGA < 4:159490/149‑1 CGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTG < 7:220291/148‑1 CGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTG < 7:214570/148‑1 CGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCT < 5:247032/147‑1 CGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCT < 7:323276/147‑1 CGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCT < 1:359643/147‑1 CGGCTTGGGAATTACAACCGGTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGGTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGGCATGCCATCGGCACCCGGTGCTCCCTTGTTGCT < 5:298160/147‑1 CGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCC > 5:17413/1‑149 CAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGC < 3:135755/113‑1 CAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGC > 4:135755/1‑113 TTGCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGT < 6:17413/148‑1 GCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGA < 6:335276/149‑1 GCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGA > 5:81169/1‑149 GCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTG > 1:293498/1‑147 GCTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTG < 2:293498/147‑1 CTGACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGAT > 2:114420/1‑149 GACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCG > 8:12677/1‑149 ACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGC < 5:167264/149‑1 ACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGC > 4:166873/1‑149 ACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGC < 8:214570/149‑1 ACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGC < 8:220291/149‑1 ACTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGC < 3:295804/149‑1 CTTGGCGGGCTACGTGAGACAGTCTTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCC < 8:260562/149‑1 CTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCC < 8:138538/149‑1 CCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGCTGGTATTCACCGGCCAGTAACCTGACCTTGAGGGTTGGCCAATACTGTCTCACGTAGCCCGCCAAGTCAGCGACCGTCATGCCATCGGCACCCGGTGCTCCCTTGTTGCTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1426472‑1426319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgacTTGGCGGGCTACGTGAGACAGTATTGGCCAACCCTCAAGGTCAGGTTACTGGCCGGTGAATACCAGCCCCAAGCAGTGCGAGCGGTTGAAATTCCCAAGCCGCAGGGCGGCACACGGCAACTGGGAATCCCCAGCGTCGTGGATCGCC > NC_002947/1426367‑1426514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |