| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1443471 = | 65 (1.020) | 4 (0.060) | 4/258 | NT | 5.8% | coding (715/948 nt) | PP_1262 | LysR family transcriptional regulator |
| ? | NC_002947 | 1443512 = | 66 (1.070) | coding (674/948 nt) | PP_1262 | LysR family transcriptional regulator | |||||
CGCCTGCCTGCGCATGGTCAGCCCGGTGATACCGCTGGAGAAGTGGCTGTTCGATGGCCCGGAAGGCCAAGAGATGGTCAACATCACCAGTTCGCCGTTCATGGTGAACACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1443622‑1443471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCATCGAACAGCCACTTCTCCAGCGGTATCACCGGGCTGACCATGCGCAGGCAGGCGTGCTTGAGCAGGTCGGCAGGCTTGTGCGCCACGC > NC_002947/1443512‑1443656 CGCCTGCCTGCGCATGGTCAGCCCGGTGATACCGCTGGAGAAGTGGCTGTTCGATGGCCCGGAAGGCCAAGAGATGGTCAACATCACCAGTTCGCCGTTCATGGTGAACACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGG < 5:388031/149‑1CGCCTGCCTGCGCATGGTCAGCCCGGTGATACCGCTGGAGAAGTGGCTGTTCGATGGCCCGGAAGGCCAAGAGATGGTCAACATCACCAGTTCGCCGTTCATGGTGAACACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGG < 6:319256/149‑1 GTGAACACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGGGCGGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCAT < 5:209399/107‑1 GTGAACACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGGGCGGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCAT > 6:209399/1‑107 ACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGGGCGGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCATCGAACAGCCACTTCTCCAGCGGTATCACCG > 3:324801/1‑131 ACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGGGCGGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCATCGAACAGCCACTTCTCCAGCGGTATCACCG < 4:324801/131‑1 GGCGGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCATCGAACAGCCACTTCTCCCGCGGTATCACCGGGCTGACCATGCGCAGGCAGGCGTGCTTGAGCAGGTCGGCAGGCTTGTGCGCCACGC > 2:15332/1‑149 CGCCTGCCTGCGCATGGTCAGCCCGGTGATACCGCTGGAGAAGTGGCTGTTCGATGGCCCGGAAGGCCAAGAGATGGTCAACATCACCAGTTCGCCGTTCATGGTGAACACCGCCGATGCCATGAAGACTGCGATCCGCAGTGGCATGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1443622‑1443471‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgGTGTTCACCATGAACGGCGAACTGGTGATGTTGACCATCTCTTGGCCTTCCGGGCCATCGAACAGCCACTTCTCCAGCGGTATCACCGGGCTGACCATGCGCAGGCAGGCGTGCTTGAGCAGGTCGGCAGGCTTGTGCGCCACGC > NC_002947/1443512‑1443656 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |