New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1666772 =	52 (0.820)	5 (0.080)	4/258	NT	7.8%	intergenic (‑44/‑227)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit
	?	NC_002947	1666853 =	67 (1.090)					intergenic (‑125/‑146)	PP_1460/ffh	membrane protein/signal recognition particle GTPase subunit

AAGGCGGCGATTATAGCGAAGTGCAGCGACGACGCACACCTTGGTAGATATTCGGTGGCTGTGCTGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1666923‑1666772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCGGGTGTGTGTTTCCCCCCTGGCACCTGACAAACCTCGGCTTTACTGGGCCTGAAAGGATCACCAT  >  NC_002947/1666853‑1667000                                                                                                                                                                                                                                                                                                              AAGGCGGCGATTATAGCGAAGTGCAGCGACGACGCACACCTTGGTAGATATTCGGTGGCTGTGCTGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCAC                                                                                                                                                         <  5:7978/149‑1       GCGATTATAGCGAAGTGCAGCGACGACGCACACCTTGGTAGATATTCGGTGGCTGTGCTGGCCTCTTCGCGGGCGCGCCCCCACACACAGGCTACTCACAACCTGCAGGCCTTCGCCCTACCAGTGGGGGCGGGCGTGCCCACGAAagc                                                                                                                                                   >  5:247773/1‑146                                                                                       GCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCT                                                                            <  5:235311/140‑1                                                                                       GCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCT                                                                            >  6:235311/1‑140                                                                                       GCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGC                                                                   >  8:121798/1‑149                                                                                        CTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCG                                                                  >  8:264657/1‑149                                                                                               AGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCGGGTGTGT                                                           <  7:121798/149‑1                                                                                                                                                     CGAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCGGGTGTGTGTTTCCCCCCTGGCACCTGACAAACCTCGGCTTTACTGGGCCTGAAAGGATCAC     <  2:372242/149‑1                                                                                                                                                      GAAGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCGGGTGTGTGTTTCCCCCCTGGCACCTGACAAACCTCGGCTTTACTGGGCCTGAAAGGATCAC     >  3:198659/1‑148                                                                                                                                                        AGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCGGGTGTGTGTTTCCCCCCTGGCACCTGACAAACCTCGGCTTTACTGGGCCTGAAAGGATCACCAT  <  7:191785/149‑1                                                                                                                                                                                                                                                                                                              AAGGCGGCGATTATAGCGAAGTGCAGCGACGACGCACACCTTGGTAGATATTCGGTGGCTGTGCTGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGATCCTCACTACCTGCAGGCCTGCGCCATACCTGTGGGAGCGGGCGTGCCCACGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1666923‑1666772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaaGAGGCCAGCACAGCCACCGAATATCTACCAAGGTGTGCGTCGTCGCTGCACTTCGCTATAATCGCCGCCTTGCTGTGCCCGGCGGGTGTGTGTTTCCCCCCTGGCACCTGACAAACCTCGGCTTTACTGGGCCTGAAAGGATCACCAT  >  NC_002947/1666853‑1667000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.