New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2071179	38 (0.600)	3 (0.050)	3/230	NT	7.7%	intergenic (+131/+96)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	= 2071216	39 (0.710)					intergenic (+168/+59)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor

ATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2071017‑2071179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgggcttgcccgcgaaCACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACC  <  NC_002947/2071216‑2071075                                                                                                                                                                                                                                                                                                                   ATACGATTAACCGGCTTAGCCGCGAAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCG                                                                                                                                                              >  6:315010/1‑149   ACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGG                                                                                                                                                            >  3:95290/1‑149     GATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCT                                                                                                                                                          >  1:103908/1‑149        TAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGC                                                                                                                                                       >  5:105764/1‑149         AACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCAGGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGAATTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGC                                                                                                                                                       <  1:257494/148‑1          ACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCCCGCTTGtgt                                                                                                                                                     <  3:8111/149‑4            CGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGC                                                                                                                                                   >  6:208929/1‑149            CGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGC                                                                                                                                                   >  2:227090/1‑149              GCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCG                                                                                                                                                  >  1:113981/1‑148               CTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGTGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAA                                                                                                                                                <  3:185729/149‑1                                                           GGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGG                                                                                                    <  6:4595/149‑1                                                                   GAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGG                                                                                                                                                            <  3:73727/85‑1                                                                   GAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGG                                                                                                                                                            >  4:73727/1‑85                                                                      AGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAA                                                                                                                                                >  6:78900/1‑94                                                                      AGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAA                                                                                                                                                <  5:78900/94‑1                                                                                  GTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCT                                                                                                          <  1:19881/120‑1                                                                                  GTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCT                                                                                                          >  2:19881/1‑120                                                                                                                                                  AGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCT             <  7:84897/149‑1                                                                                                                                                  AGCGGGCTTGACCGCGAACAGGGGGGAAGCCCGTGCCATCCACAACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGGCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCc             <  3:244383/149‑2                                                                                                                                                      GGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCA         <  3:306495/149‑1                                                                                                                                                        CTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACA       >  6:105764/1‑149                                                                                                                                                        CTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCC                                                             >  3:108882/1‑95                                                                                                                                                        CTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCC                                                             <  4:108882/95‑1                                                                                                                                                         TTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCC              >  7:20540/1‑141                                                                                                                                                         TTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCC              <  8:20540/141‑1                                                                                                                                                             CCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTCTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGACTAGGAGCCGGATTCACACCCGCCGACCTCTCACACCACC  >  3:29795/1‑149                                                                                                                                                                                                                                                                                                                   ATACGATTAACCGGCTTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2071017‑2071179 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgggcttgcccgcgaaCACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGCCCGCTTGTGTCGCGATGGGCTGCACAGCAGCCCCAATGGCCCTGAAAATCGAGTAGGAGGCGGATTCACACCCGCCGTCCTCTCACACCACC  <  NC_002947/2071216‑2071075

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.