New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2086250	NA (NA)	5 (0.080)	3/250	NT	NA	coding (365/1302 nt)	PP_1865	transposase
	?	NC_002947	= 2086296	NA (NA)					coding (411/1302 nt)	PP_1865	transposase

CAAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2086095‑2086250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgaaaaCCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGCTGC  <  NC_002947/2086296‑2086149                                                                                                                                                                                                                                                                                                                   CAAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCATGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGATCGGGTGGTCGATGGCAGCCACTTGGCCTCTA                                                                                                                                                             >  5:191183/1‑149  AAGATCAGTCGAACCGTACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            >  2:384117/1‑149  AAGATCAGTCGAACCGAACCTGCCCTGTTGGGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            >  1:33225/1‑149  AAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            <  3:75822/149‑1  AAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCAACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCCCTTGGCCTCTAC                                                                                                                                                            <  8:303570/149‑1  AAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTATGGTGACACGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCATCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            <  7:83698/149‑1   AGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCATGGCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            <  1:294723/149‑1    GATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACC                                                                                                                                                           >  7:41264/1‑148    GATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTA                                                                                                                                                             >  7:168294/1‑146    GATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTA                                                                                                                                                             <  8:168294/146‑1     ATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGA                                                                                                                                                         <  7:280057/149‑1     ATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCG                                                                                                                                                          >  7:43052/1‑148      TCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGA                                                                                                                                                         >  3:221821/1‑148      TCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGA                                                                                                                                                         >  3:113255/1‑148        AGTCGAACCGAACCTGGCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  2:178305/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  6:40005/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  4:83923/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  5:147237/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  1:158015/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  5:224289/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA                                                                                                                                                      <  2:172367/149‑1        AGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAA                                                                                                                                                        >  1:129299/1‑147             AACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGGTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            >  6:326755/1‑138             AACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            <  5:326755/138‑1                               GCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAA‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            <  1:104060/120‑1                               GCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAA‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            <  1:98868/120‑1                               GCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAA‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            >  2:104060/1‑120                               GCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAA‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTAC                                                                                                                                                            >  2:98868/1‑120                                                                 GCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGA                                                                                             <  3:183723/149‑1                                                                   GCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGG                                                                                           <  6:121769/149‑1                                                                              ATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGA                                                                                             <  1:258393/136‑1                                                                              ATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGA                                                                                             >  2:258393/1‑136                                                                                                       TTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGA                                                                                             <  8:188215/112‑1                                                                                                                                                      ACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAA         <  8:176286/149‑1                                                                                                                                                      ACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAA         <  5:132137/149‑1                                                                                                                                                      ACCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCGTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAA         <  5:136537/149‑1                                                                                                                                                       CCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGACCTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAG        >  4:326748/1‑149                                                                                                                                                       CCGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAG        >  4:100458/1‑149                                                                                                                                                        CGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGC       <  4:249113/149‑1                                                                                                                                                        CGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGC       >  6:314310/1‑149                                                                                                                                                        CGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGC       >  8:243760/1‑149                                                                                                                                                        CGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCAGGGATTGTCGGCGCCAAGC       >  4:223020/1‑149                                                                                                                                                        CGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGA                                                                         <  1:354932/83‑1                                                                                                                                                        CGAAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGA                                                                         >  2:354932/1‑83                                                                                                                                                          AAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGC     >  1:148958/1‑149                                                                                                                                                          AAAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGC     >  2:33225/1‑149                                                                                                                                                           AAACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGCT    <  7:68922/149‑1                                                                                                                                                            AACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGCTG   <  3:224645/149‑1                                                                                                                                                             ACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGCTGC  <  1:376721/149‑1                                                                                                                                                             ACCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGCTGC  <  8:195716/149‑1                                                                                                                                                                                                                                                                                                                   CAAGATCAGTCGAACCGAACCTGCCCTGTTGCGTGCTCTGGTGACAGGCTGCGCGCAGCGCTTGGCGCCGACAATCCATGAGTTGGGCTGCTCAGCCAT‑GCTTCCTGATTGGCAAGTTCGGGTGGTCGATGGCAGCCACTTGGCCTCTACCGAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2086095‑2086250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgaaaaCCCGGGGCGAGCCGCTCCGCGCTCTTGGCGCAACGCGCCAAGACGCTTTTCGGTAGAGGCCAAGTGGCTGCCATCGACCACCCGAACTTGCCAATCAGGAAGCATGGCTGAGCAGCCCAACTCATGGATTGTCGGCGCCAAGCGCTGC  <  NC_002947/2086296‑2086149

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.