New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3053790 =	63 (0.990)	3 (0.050)	3/252	NT	5.1%	coding (121/666 nt)	agmR	glycerol metabolism activator
	?	NC_002947	3053837 =	52 (0.860)					coding (74/666 nt)	agmR	glycerol metabolism activator

CCCGCTCCATCCAATAAAAACAAGGTGAAAAGGCCATGTACAAAATTCTGATTGCCGACGATCACCCCCTGTTTCGCGAAGCCATCCACAATGTCATCAGCGATGGTTTCCAGGGCAGCGAGGTCATGGAGACCGCCGACCTTGAAAGCGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3053945‑3053790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGATGGAGCGGGGCACGCATACACAGGCACTTCAGGGAAACGGCACCG  >  NC_002947/3053837‑3053981                                                                                                                                                                                                                                                                                                               CCCGCTCCATCCAATAAAAACAAGGTGAAAAGGCCATGTACAAAATTCTGATTGCAGACGATCACCCCCTGTTTCGCGAAGCCATCCACAATGTCATCAGCGATGGTTTCCA‑GGCAGCGAGGTCATGGAGACCGCCGACCTTGAAAGCG                                                                                                                                                         >  5:394329/1‑149                                                                                                            TTCCAGGGCAGCGAGGTCATGGAGACCGCCGACCTTGAAAGCGCCCTGGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTT                                                           <  3:314247/137‑1                                                                                                            TTCCAGGGCAGCGAGGTCATGGAGACCGCCGACCTTGAAAGCGCCCTGGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTT                                                           >  4:314247/1‑137                                                                                                             TCCAGGGCAGCGAGGTCATGGAGACCGCCGACCTTGAAAGCGCACTGGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGAT                                              >  2:13993/1‑149                                                                                                                                                       CCCTGGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGATGGAGCGGGGAACGCATACCCAGGACGTTAAGGGAAACGGAAC    >  3:53278/1‑149                                                                                                                                                         CTGGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGATGGAGCGGGGCACGCATACACAGGCACTTCAGGGAAACGGCACCG  >  8:105123/1‑149                                                                                                                                                           GGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGATGGAGCGGGGCACGCATACACAGGCACTTCAGGGAAACGG       <  1:27795/142‑1                                                                                                                                                           GGAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGATGGAGCGGGGCACGCATACACAGGCACTTCAGGGAAACGG       >  2:27795/1‑142                                                                                                                                                                                                                                                                                                               CCCGCTCCATCCAATAAAAACAAGGTGAAAAGGCCATGTACAAAATTCTGATTGCCGACGATCACCCCCTGTTTCGCGAAGCCATCCACAATGTCATCAGCGATGGTTTCCAGGGCAGCGAGGTCATGGAGACCGCCGACCTTGAAAGCGCCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3053945‑3053790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctggAAACCATCGCTGATGACATTGTGGATGGCTTCGCGAAACAGGGGGTGATCGTCGGCAATCAGAATTTTGTACATGGCCTTTTCACCTTGTTTTTATTGGATGGAGCGGGGCACGCATACACAGGCACTTCAGGGAAACGGCACCG  >  NC_002947/3053837‑3053981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.