New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3459711	55 (0.870)	4 (0.070)	4/252	NT	5.9%	coding (651/1446 nt)	PP_3075	transcriptional regulator
	?	NC_002947	= 3459774	76 (1.260)					coding (588/1446 nt)	PP_3075	transcriptional regulator

GCCGCTGCGGCCCTTGCGGTCGGCACCGGTAAAGGCACCCGGCGCAGTACCGAAGAATTCGGCTTCCAGCAGCGTCTCCGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3459564‑3459711 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCACGCCATTCACGCAGCGTCGGCACGGGCACACAGAGCTTTTGTCAGCATCAACAGCGCAGCCATCCCGGAGACGCTGCTGGAA  <  NC_002947/3459774‑3459627                                                                                                                                                                                                                                                                                                          GCCGCTGCGGCCCTTGCGGTCGGCACCGGTAAAGGCACCCGGCGCAGTACCGAAGAATTCGGCTTCCAGCAGCGTCTCCGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGG                                                                                                                                                      <  2:305913/148‑1  CCGCTGCGGCCCTTGCGGTCGGCACCGGTAAAGGCACCCGGCGCAGTACCGAAGAATTCGGCTTCCAGCAGCGTCTCTGGGAGGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCCTGG                                                                                                                                                      <  6:79439/147‑1                                                TACCGAAGAATTCGGCTTCCAGCAGCGTCTCCGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGGCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGG                                                                                                      >  4:194484/1‑149                                                                   CAGCAGCGTCTCCGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGGCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCA                                                                                    <  3:306937/148‑1                                                                        GCGTCTCCGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGGCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCACGCCAT                                                                              <  3:194484/149‑1                                                                               CGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGGCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCACGCCATTCAC                                                                          <  6:313332/146‑1                                                                                                                                                CGTGGCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCACGCCATTCACGCAGCGTCGGCACGGGCACACAGAGCTTTTGTCAGCATCAACAGCGCAGCCATCCCGGAGACGCTGCT      <  8:74957/149‑1                                                                                                                                                    GCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCACGCCATTCACGCAGCGTCGGCACGGGCACACAGAGCTTTTGTCAGCATCAACAGCGCAGCCATCCCGGAGACGCTGCTGGAA  <  5:89896/149‑1                                                                                                                                                                                                                                                                                                          GCCGCTGCGGCCCTTGCGGTCGGCACCGGTAAAGGCACCCGGCGCAGTACCGAAGAATTCGGCTTCCAGCAGCGTCTCCGGGATGGCTGCGCTGTTGATGCTGACAAAAGCTCTGTGTGCCCGTGCCGACGCTGCGTGAATGGCGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3459564‑3459711 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgtggCGCCGGCAGTGATTCGCCCGTGTTGCTGCTGGGCGAAACCGGTACCGGCAAGGAGCTGCTGGCCCACGCCATTCACGCAGCGTCGGCACGGGCACACAGAGCTTTTGTCAGCATCAACAGCGCAGCCATCCCGGAGACGCTGCTGGAA  <  NC_002947/3459774‑3459627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.