| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3512773 = | 46 (0.720) | 3 (0.050) | 3/252 | NT | 6.0% | coding (1441/4158 nt) | PP_3108 | rhs family protein |
| ? | NC_002947 | 3512842 = | 50 (0.830) | coding (1510/4158 nt) | PP_3108 | rhs family protein | |||||
TATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCGGAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3512926‑3512773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagtgCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCC > NC_002947/3512842‑3512986 TATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCG > 1:312032/1‑148 GCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCGGAAGT > 3:298365/1‑149 CTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACA > 5:59050/1‑149 GCACTTCCAGCTCGCGGCCGAGCCCGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCCGCCGCGATTATGGCGGGGAGCGTTCCGCGCTCGAGCTGGACGAcgacg > 4:343092/1‑144 CGAGCACGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGA < 6:59050/149‑1 GAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTACCCGCCTGCAATTCAAGTACGACGAATTCTC > 7:89468/1‑149 GAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTC < 1:392538/149‑1 GAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTC > 6:35986/1‑149 GAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTC > 7:84062/1‑149 AGTGCAGTACAACGCCGTCCCCCGCGTGGTCGCCAGCCGCGATTTTGGCGGGGAGCGTTACGCCATCGAGGTGGACGAACACGGCAATATCCGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTC < 1:304604/149‑1 AGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCC < 1:394718/149‑1 AGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCC < 6:250593/149‑1 TATTGCCGTGTTCGTCCAGCTCGATGGCGTAACGCTCCCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCGAGCACGTCGGTGGCCCAGCTGGTGCGGCTATCGAGGTCGTAGCGGAAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3512926‑3512773‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaagtgCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGGGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATAT‑‑GGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCC > NC_002947/3512842‑3512986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |