New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3531291 =	64 (1.010)	4 (0.070)	4/254	NT	6.5%	intergenic (+6/+177)	dnaEB/yeaE	error‑prone DNA polymerase/methylglyoxal reductase
	?	NC_002947	3531352 =	54 (0.890)					intergenic (+67/+116)	dnaEB/yeaE	error‑prone DNA polymerase/methylglyoxal reductase

GGAGCAGCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCTTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3531440‑3531291 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgttgCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCG  >  NC_002947/3531352‑3531494                                                                                                                                                                                                                                                                                                       GGAGCAGCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCTTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTT                                                                                                                                                  >  5:123752/1‑149  GAGCAGCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCTTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTTG                                                                                                                                                 <  5:163599/149‑1                                                                                      CTTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTTGCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGA                                                                        >  7:69614/1‑138                                                                                      CTTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTTGCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGA                                                                        <  8:69614/138‑1                                                                                       TTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTTGCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTG                                                            >  8:41180/1‑149                                                                                                                                        AAGTACCGAGCGTTGCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCG           <  7:41180/149‑1                                                                                                                                                 GCGTTGCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCG  <  2:360445/149‑1                                                                                                                                                                                                                                                                                                       GGAGCAGCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGTGGGAGCGGGCATGCCCGCGAACACCGGCAAGGCCGGTGCCTTGCAACGCGGTGGCTGCTTCGCGGGCTCGCCCGCACGGGAAACCGTGCAAGTACCGAGCGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3531440‑3531291 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgttgCAAGGCACCGGCCTTGCCGGTGTTCGCGGGCATGCCCGCTCCCACAGGGATCGCGCCAGCTTTTAGAAATTGAGCAAGACAGCTGCTCCCAAAGGTCGCGTCCAGATTGCGCTCGCCTACACCATCGCCAACCGCTGCTTGCG  >  NC_002947/3531352‑3531494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.