| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3903930 | 56 (0.880) | 5 (0.080) | 5/252 | NT | 8.5% | coding (813/1593 nt) | ilvA‑I | threonine deaminase |
| ? | NC_002947 | = 3903964 | 55 (0.910) | coding (779/1593 nt) | ilvA‑I | threonine deaminase | |||||
CCTGCACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3903776‑3903930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcggTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGGCCTTGGC < NC_002947/3903964‑3903820 CCTGCACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAG > 2:260862/1‑149 ACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCCCAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCG > 3:239520/1‑149 CACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGG < 2:341924/149‑1 TTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGTGGCGCAGATCGGCGCCCAT > 6:178907/1‑149 GGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGC‑‑‑GGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGT < 2:388760/149‑1 CCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTC < 5:178907/149‑1 CCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGC > 1:84577/1‑91 CCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGC < 2:84577/91‑1 GTGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGGCCTT < 7:12921/149‑1 TGGCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGGCCTTG < 1:312183/149‑1 GCGGTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGGCCTTGGC > 8:76248/1‑149 CCTGCACACCTTCACGCGCCACGTACTTCTTGATACCGGCCACGGCCAAGGCCCCGGACGGCTCGGTGATCGAACGGGTGTCGTCGTAGATATCCTTGATCGCCGCGCACAGCTCGTCACTGCTCACCGTCACCACCTCGTCGACGAAGTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3903776‑3903930‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcggTGGCGCAGATCGGCGCCCATTGCTTCGAGCTGTGCCGCCACTTCGTCGACGAGGTGGTGACGGTGAGCAGTGACGAGCTGTGCGCGGCGATCAAGGATATCTACGACGACACCCGTTCGATCACCGAGCCGTCCGGGGCCTTGGC < NC_002947/3903964‑3903820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |