New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4030870	55 (0.870)	3 (0.050)	3/256	NT	5.1%	coding (533/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein
	?	NC_002947	= 4030910	58 (0.950)					coding (573/1770 nt)	PP_3554	acyl‑CoA dehydrogenase family protein

TTCGGCATTGAGCG‑CAGGCAGCTGCCTGGCGATCGATGCCCACGCCAGCGAAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4030721‑4030870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgatGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCC  <  NC_002947/4030910‑4030862                                                                                                                                                                                                          gtgGGCATCGATCGCCAGGCAGCTGCCT‑GCGCTCAATGCCCACGCCAGCGAAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGCCCTGGGGCTGA                                                    >  4:372602/4‑149    GGCATTGAGCG‑CAGGCAGCTGCCTGGCGATCGATGCCCACGCCAGCGAAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATGC                                                 >  1:17947/1‑149                                                 GCGAAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGC     <  2:17947/149‑1                                                   GAAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCC   <  7:360311/149‑1                                                    AAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAACGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGATGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCC  <  4:266908/149‑1                                                                                                                                                                                                          TTCGGCATTGAGCG‑CAGGCAGCTGCCTGGCGATCGATGCCCACGCCAGCGAAGCGCTCAAGGCCACTTACCTGCCACCGCTGTACGAAGGCCGCTGGGCCGGCACCATGTGCCTGACCGAACCCCATGCCGGCACTGACCTGGGGCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4030721‑4030870 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgatGCGCACGCTGCCATCGGCCTGAGGCTCGGCGCGGGTGCGGATCAGCCCC  <  NC_002947/4030910‑4030862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.