New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4551973 | 18 (0.280) | 4 (0.080) | 4/200 | NT | 17.6% | intergenic (+67/+114) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
? | NC_002947 | = 4552024 | 24 (0.500) | intergenic (+118/+63) | pydA/rutR | NADP‑dependent dihydropyrimidine dehydrogenase subunit PreA/transcriptional regulator, TetR family |
GCCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4551794‑4551973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgtgtcgcgatcgggccgcGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGCG < NC_002947/4552024‑4551878 GCCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTG > 8:1506/1‑149 CCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGT > 2:364617/1‑149 CCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGT < 4:71770/149‑1 CAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGTGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTG > 6:102740/1‑149 ATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGA < 5:203484/149‑1 TCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAG > 8:341803/1‑149 ACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGC < 7:1506/148‑1 CCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTT < 4:306648/149‑1 CCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTT < 5:7754/149‑1 CGGTGGAAAACTGCATCGAAATGGTGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGT < 5:102740/149‑1 GGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTG > 2:70714/1‑149 AAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGA > 1:156254/1‑149 CTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCG < 1:364617/149‑1 ATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCC < 5:152429/149‑1 CCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGA < 7:352395/149‑1 CCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGAT > 7:172792/1‑149 CCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATC < 2:14278/149‑1 CCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGC < 8:172792/147‑1 TGTCGCGATCGGGCCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGTCACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCAC > 1:6710/1‑149 cgagGGGCCGCTTCGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGCCACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGG > 1:192686/5‑149 CCGCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACG > 7:341803/1‑149 GCGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGCG > 1:70714/1‑149 GCCAGATCACCTGCCCGGTGGAAAACTGCATCGAAATGGAGGCACAGGATACCGGCAAGCCGTACCTGAACTGGACGCAGGATCCGCGTAACCCCTACCGTGAGGCCAGTTGAAGCGGGTCACCGCCTGAACAGCTGACGCGGCCCCTGTGGGAGCGGCCTTGTGTCGCGATCGGGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4551794‑4551973 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgtgtcgcgatcgggccgcGAAGCGGCCCCTCGATGTCTGTATCGCGGCAAAGACTGCTGGGGCCGCTGTGCGGCCCGATCGCGACACAAGGCCGCTCCCACAGGGGCCGCGTCAGCTGTTCAGGCGGTGACCCGCTTCAACTGGCCTCACGGTAGGGGTTACGCG < NC_002947/4552024‑4551878 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |