New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4570328 =	71 (1.120)	4 (0.070)	4/252	NT	5.6%	coding (192/2775 nt)	treY	maltooligosyl trehalose synthase
	?	NC_002947	4570366 =	68 (1.130)					coding (230/2775 nt)	treY	maltooligosyl trehalose synthase

CATACGGACTGCGCCGTCCCCAGGCCAGCAGGCTTTGCCACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4570482‑4570328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTC  >  NC_002947/4570366‑4570510                                                                                                                                                                                                                                                                                                               CATACGGACTGCGCCGTCCCCAGGCCAGCAGGCTTTGCCACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCG                                                                                                                                                         >  7:220287/1‑149       GACTGCGCCGTCCCCAGGCCAGCAGGCTTTGCCACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCC                                                                                                                                                   <  3:147589/149‑1        ACTGCGCCGTCCCCAGGCCAGCAGGCTTTGCCACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCC                                                                                                                                                    >  6:395464/1‑147                                        ACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCC                                                                                                                                                   >  1:57856/1‑116                                        ACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCC                                                                                                                                                   <  2:57856/116‑1                                                                                                                 GCGCAGGGCGGCAACCAGGCGCTCCAGCGCGGGCCTCGCCGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGC                                          >  1:35236/1‑149                                                                                                                   GCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCG                                         >  7:351249/1‑147                                                                                                                     AGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGT                                     >  5:110222/1‑149                                                                                                                                         CAGCGC‑GGCCTCGCCGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTC                   <  2:35236/147‑1                                                                                                                                                       CCGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTG        <  1:95735/145‑1                                                                                                                                                       CCGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTG        >  2:95735/1‑145                                                                                                                                                        CGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTC                   <  5:279641/133‑1                                                                                                                                                        CGCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTC                   >  6:279641/1‑133                                                                                                                                                         GCCCTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTC  >  3:151427/1‑149                                                                                                                                                                                                                                                                                                               CATACGGACTGCGCCGTCCCCAGGCCAGCAGGCTTTGCCACCAGGGGTTGTCGGCACCGCCTACGGCCATGTGGTTGGACACCGTGTCGAGGATCAGCCCCATGCCATGCTGGCGCAGGGCGGCAACCAGGCGCTCCAGCGC‑GGCCTCGCCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4570482‑4570328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgcccTGCGCCAGCATGGCATGGGGCTGATCCTCGACACGGTGTCCAACCACATGGCCGTAGGCGGTGCCGACAACCCCTGGTGGCAAAGCCTGCTGGCCTGGGGACGGCGCAGTCCGTATGCAGAGTTCTTCGACATCCAGTGGCACTC  >  NC_002947/4570366‑4570510

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.