New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5045678 =	34 (0.540)	24 (0.390)	22/260	NT	41.9%	intergenic (‑45/+48)	PP_4449/PP_5682	hypothetical protein/hypothetical protein
	?	NC_002947	= 5545666	NA (NA)					intergenic (‑806/+71)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

ATTGAACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5045827‑5045678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATAC  <  NC_002947/5545666‑5545540                                                                                                                                                                                                                                                                                       ATTGAACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGA                                                                                                                                  <  3:44249/149‑1     AACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGAT                                                                                                                               <  4:36832/148‑1          GAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAAACGGCGCCCCCTCCGAGGTAGCTAATTAGCAAGTGAAGGCTTGAGAGAGGCTATGCACGTTTACATCTACATGAGAGATCACCaa                                                                                                                         >  6:46904/1‑147                   GGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTTTGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCC                                                                                                                 <  3:162452/148‑1                            GCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGTTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCT                                                                                                       >  4:359448/1‑149                                             AGCAGTTACTGATTAACAGCTTAGGGCAATGGGCGGCCCCTCCGACGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAG                                                                                       >  5:220120/1‑148                                                 GTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCCCCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGC                                                                                  >  4:134945/1‑149                                                             CAGCTTAGGGCAATGGGCGGCCACTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGTCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCAGGGCTGCGCTGTCGCACAGCAAACAGGGTGCGCATGACGT                                                                         >  6:71516/1‑146                                                                   AGGGGAATGGGAGGCGCCTCCGAGGTTGCTGATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCTTGAGTTATCACCCAGCCCTTCCGTGCTGCGCTGTCGCACAGCTAACAGGATGAGCATGAGGTGAGATCTG                                                                 <  5:46904/148‑1                                                                   AGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCT                                                                  <  3:160999/147‑1                                                                    GGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGC                                                                <  6:215338/148‑1                                                                       CAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACT                                                             >  2:334584/1‑148                                                                             GCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGGTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATC                                                       >  6:271166/1‑148                                                                                  CCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATC                                                 >  8:74049/1‑149                                                                                  CCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATC                                                 >  3:389968/1‑149                                                                                       CGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGGTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAG                                              <  5:271166/147‑1                                                                                         AGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCTGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAA                                          <  8:206048/149‑1                                                                                            TAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCA                                       >  4:183476/1‑149                                                                                               CTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTTCACTGACATCGAGATCTAGAAAAGCAT                                      >  7:168116/1‑147                                                                                                  ATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGC                                  <  7:74049/148‑1                                                                                                      GCATGTGAAGGGTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAC                              <  3:359448/148‑1                                                                                                      GCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGAC                              <  3:183476/148‑1                                                                                                         TGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGAT                          >  1:213495/1‑149                                                                                                                  TTGAGAGTGGCTATGCACGTTTTCAGCTACATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGG                 >  1:221390/1‑149                                                                                                                            CTATGCACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCG       <  2:213495/149‑1                                                                                                                                 CACGTTTTCAGCTTCATGAGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATAC  <  4:389968/149‑1                                                                                                                                                                                                                                                                                       ATTGAACTTGAGCGATTGGGGCTGATGGCTGAGCACCGCTTCCAAGCAGTTACTGATTACCAGCTTAGGGCAATGGGCGGCCCCTCCGAGGTAGCTCATTAGCATGTGAAGGCTTGAGAGTGGCTATGCACGTTTTCAGCTTCATGAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5045827‑5045678 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATAC  <  NC_002947/5545666‑5545540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.