New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5195540	56 (0.880)	4 (0.070)	3/250	NT	6.2%	coding (289/918 nt)	PP_4575	urea amidolyase‑like protein
	?	NC_002947	= 5195562	69 (1.160)					coding (267/918 nt)	PP_4575	urea amidolyase‑like protein

AGCGCAGCACCCTGGCCATCGATGCCACCCAGTGCTTCACGTACCACAGTGGCACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5195386‑5195540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttggcGCCATGGCGCAGCTTTGCCCTGGCCAAGGGGCAG  <  NC_002947/5195562‑5195529                                                                                                                                                                                               AGCGCAGCACCCTGGCCATCGATGCCACCCAGTGCTTCACGTACCACAGTGGCACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCC                                          >  4:310086/1‑149       GCACCCTGGCCATCGATGCCACCCAGTGCTTCACGTACCACAGTGGCACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCCCTTGGC                                    <  3:378397/149‑1                                        CGTACCACAGTGGCACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCCCTTGGCGCCATGGCGCAGCTTTGCCCTGGCCAAGGGGCA   <  1:201756/149‑1                                                     CACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCCCTTGGCGCCATGGCGCAGCTTTGCCCTGGCCAAGGGGCAG  >  7:154427/1‑137                                                     CACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCCCTTGGCGCCATGGCGCAGCTTTGCCCTGGCCAAGGGGCAG  <  8:154427/137‑1                                                     CACAACTGCCCAGCACATCCTCGCCAAGAAACACACACGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCAGCCCCTTGGCGACATGGCGCAGCTTTGCCCTCTCCAAGCGGCAG  >  7:154424/1‑137                                                                                                                                                                                               AGCGCAGCACCCTGGCCATCGATGCCACCCAGTGCTTCACGTACCACAGTGGCACAACTGCCCAGCACATCCTCGCCCAGAAACCCACCCGGTGCCGCCAGATACGCCCGCACACCCACTTTGGGCTGCTTCAGGGTCAAGCGCTGCCCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5195386‑5195540 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccttggcGCCATGGCGCAGCTTTGCCCTGGCCAAGGGGCAG  <  NC_002947/5195562‑5195529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.