New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5214275	52 (0.820)	3 (0.050)	3/252	NT	5.4%	intergenic (+10/+100)	ybaO/PP_4596	LRP‑like transcriptional regulator/putative oxidoreductase
	?	NC_002947	= 5214357	56 (0.930)					intergenic (+92/+18)	ybaO/PP_4596	LRP‑like transcriptional regulator/putative oxidoreductase

TGGTGGTGGGTGATATTGCTGCGTATGACCGGTTCTACAAAAAGCTGATTACCCATACCGATGGGCTATCGAACATCACGTCCAGTTTTGCCATGGAGCAGATGAAGTACACCACGGCTTACCCGGTGCATCGCGCCTGACCGGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5214126‑5214275 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATGGCAAAAC  <  NC_002947/5214357‑5214210                                                                                                                                                                                                                                                                                                            TGGTGGTGGGTGATATTGCTGCGTATGACCGGTTCTACAAAAAGCTGATTACCCATACCGATGGGCTATCGAACATCACGTCCAGTTTTGCCATGGAGCAGATGAAGTACACCACGGCTTACCCGGTGCATCGCGCCTGACCGGTGCTG                                                                                                                                                       <  5:260920/149‑1      gttGGTGATATTGCTGCGTAAGCCCGGTTCTACAAAAAGCTTATTACCCATACCGATGGGCTATCGAACATCACGTCCAGTTTTGCCATGGAGCAGATGAAGTACACCACGGCTTTCCGGGTGCATCGCGCCTGACCGGTGGTGGtttc                                                                                                                                                  <  6:398761/146‑5                                                     CCATACCGATGGGCTATCGAACATCACGTCCAGTTTTGCCATGGAGCAGATGAAGTACACCACGGCTTACCCGGTGCATCGCGCCTGACCGGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTT                                                                                                    >  4:213124/1‑148                                                                                        TTGCCATGGAGCAGATGAAGTACACCACGGCTTACCCGGTTCATCGCGCCTGACCGGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCA                                                                 <  3:253736/148‑1                                                                                           CCATGGAGCAGATGAAGTACACCACGGCTTACCCGGTGCATCGCGCCTGACCGGTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCAC                                                             <  3:213124/149‑1                                                                                                                                                GTGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATGG        <  8:40027/149‑1                                                                                                                                                 TGCTGGCCTCTTCGCGGGTTAACCCGCTCCTACGGTACCCCACAGCGCTTGAGGGTGAGGCGATCCTGTAAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATG         <  7:167513/147‑1                                                                                                                                                 TGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATGG        >  2:340317/1‑148                                                                                                                                                 TGCTGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATGG        >  6:162155/1‑148                                                                                                                                                    TGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATGGCAA     >  7:1390/1‑148                                                                                                                                                    TGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTG                              <  7:237171/123‑1                                                                                                                                                    TGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTG                              >  8:237171/1‑123                                                                                                                                                      GCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCACAAAGCGCTTGAGGTTGAGGTGATCATGTGAGGTTGCACGCGAAGAATCCAGCACCGGTCAGCAGCGATGCACCGGGTAATCAGTGCTGTACTAAATCTGCTCAATTGCAAAAa  >  6:1092/1‑148                                                                                                                                                                                                                                                                                                            TGGTGGTGGGTGATATTGCTGCGTATGACCGGTTCTACAAAAAGCTGATTACCCATACCGATGGGCTATCGAACATCACGTCCAGTTTTGCCATGGAGCAGATGAAGTACACCACGGCTTACCCGGTGCATCGCGCCTGACCGGTGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5214126‑5214275 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctggCCTCTTCGCGGGTGAACCCGCTCCTACGGGACCCCACAGCGCTTGAGGTTGAGGTGATCCTGTGAGGTTGCCCGCGAAGAATCCAGCACCGGTCAGGCGCGATGCACCGGGTAAGCCGTGGTGTACTTCATCTGCTCCATGGCAAAAC  <  NC_002947/5214357‑5214210

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.