| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5330100 = | 59 (0.930) | 6 (0.100) | 6/254 | NT | 9.4% | coding (289/714 nt) | sfsA | sugar fermentation stimulation protein A |
| ? | NC_002947 | 5330147 = | 59 (0.970) | coding (242/714 nt) | sfsA | sugar fermentation stimulation protein A | |||||
GTGAATACCGGGCGGGCCAATGCGTTGGTCGAAGAGGCCCTGCGCGCCGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5330151‑5330100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtaTTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCTGCCCACCTTCACGCATGCAGTTGAGCATGGAGCCGGTATTCGGGCAGTGGATA > NC_002947/5330147‑5330293 GTGAATACCGGGCGGGCCAATGCGTTGGTCGAAGAGGCCCTGCGCGCCGGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCTGCC > 1:170867/1‑149 CGGGCGGGCCAATGCGTTGGTCGAAGAGGCCCTGCGCGCCGGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTT > 5:358851/1‑75 CGGGCGGGCCAATGCGTTGGTCGAAGAGGCCCTGCGCGCCGGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTT < 6:358851/75‑1 GGGCGGGCCAATGCGTTGGTCGAAGAGGCCCTGCGCGCCGGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCTGCCCACCTTCAC < 2:170867/149‑1 CGGGCCAATGCGTTGGTCGAAGAGGCC‑‑‑CGC‑CCGGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAAC < 7:39646/123‑1 CGGGCCAATGCGTTGGTCGAAGAGGCC‑‑‑CGC‑CCGGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAAC > 8:39646/1‑123 GGTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACGCCTGCCCACCTTCACGCATGCAGTTGAGCATGGAGCCGGTATTCGGGCAGTGGA > 8:313634/1‑149 GTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCTGCCCACCTTCACGCATGCAGTTGAGCATGGAGCCGGTATTCG > 6:274517/1‑139 GTATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCGGCCCACCTTCACGCATGCAGTTGAGCATGGAGCCGGTATTCG < 5:274517/139‑1 TATTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCTGCCCACCTTCACGCATGCAGTTGAGCATGGAGCCGGTATTCGGGCAGTGGATA < 5:50867/149‑1 GTGAATACCGGGCGGGCCAATGCGTTGGTCGAAGAGGCCCTGCGCGCCGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5330151‑5330100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggtaTTCACGCAGGCCAACCGCCCCTGGGGGGTTTCGCTGATTTCCCAGGTCCCTGGCAGCTTGCGCTTGGGGTCGTTGGAGCGGCTGAACCACACCTGCCCACCTTCACGCATGCAGTTGAGCATGGAGCCGGTATTCGGGCAGTGGATA > NC_002947/5330147‑5330293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |