New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5487779	73 (1.150)	7 (0.120)	7/252	NT	8.6%	coding (1108/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 5487836	79 (1.310)					coding (1165/2772 nt)	PP_4824	two‑component system sensor histidine kinase/response regulator

TGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5487678‑5487779 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCAG  <  NC_002947/5487836‑5487689                                                                                                                                                                                                                                                            TGCTGCCAGCCCTGCTGGGCCTGACACGCACATCGACACACAGGCTGCTGTGTATCCTGCTGCGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGCCCAGTGCACGGCTGGCGCTGAAACGCACCTAGCATATGCGCCGCAGC                                                                                                       >  6:21319/1‑149        AGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCAC                                                                                                <  5:21319/149‑1        AGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCAC                                                                                                >  7:139943/1‑149            CTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGAC                                                                                            <  8:139943/149‑1               CTGGGCCTGCCACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACC                                                                                           <  4:384335/147‑1                          ACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGCACGGCTGGCGGTGAAACGCTCCTGGCGTATGCGCCGCAGCCGGGGCCTGACCGGCCGGGTGAG                                                                                >  4:262341/1‑147                               CCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGGTCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGG                                                                         <  3:262341/149‑1                                                                                                   GCGGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCA      <  2:291335/148‑1                                                                                                     GGCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCA   <  6:67652/149‑1                                                                                                      GCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCAG  <  8:182709/149‑1                                                                                                                                                                                                                                                            TGCTGCCAGCCCTGCTGGGCCTGACACGCACCTCGACACCCTGGCTGCTGTGTATCCTGCTGGGCCTGACCGTGGTCAGTGGCCTGCTCCTCAACCTGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5487678‑5487779 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcggCCAGTGCACGGCTGGCGCTGAAACGCTCCTCGCTTATGCGCCGCAGCCGTTCACTGACCGCCAGGTTGAGGAGCAGGCCACTGACCACGGTCAGGCCCAGCAGGATACACAGCAGCCAGGGTGTCGAGGTGCGTGTCAGGCCCAGCAG  <  NC_002947/5487836‑5487689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.