New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5512790 =	79 (1.240)	5 (0.090)	5/246	NT	6.2%	coding (426/858 nt)	urtD	ABC transporter ATP‑binding protein
	?	NC_002947	5512861 =	78 (1.330)					coding (497/858 nt)	urtD	ABC transporter ATP‑binding protein

TGCTTCTGCCCATGCGACAGCAAGCCGGCCTGGCGCTGGGCCAGCGGCAGCAGGCGCAAGGTGGTCAGCACGTCCTCGATGCGCTGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5512942‑5512790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccagcGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAACCGGTG  >  NC_002947/5512861‑5513006                                                                                                                                                                                                                                                                                                             TGCTTCTGCCCATGCGACAGCAAGCCGGCCTGGCGCTGGGCCAGCGGCAGCAGGCGCAAGGTGGTCAGCACGTCCTCGATGCGCTGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGC                                                                                                                                                        >  5:306969/1‑149      CTGCCCATGCGACAGCAAGCCGGCCTGGCGCTGGGCCAGCGGCAGCAGGCGCAAGGTGGTCAGCACGTCCTCGATGCGCTGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAG                                                                                                                                                     <  4:313043/147‑1                                                                                   GCTGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGG                                                                           <  5:329257/144‑1                                                                                   GCTGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGG                                                                           >  6:329257/1‑144                                                                                     TGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAG                                                                    >  3:76412/1‑149                                                                                             GTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCT                                                            >  1:292929/1‑149                                                                                             GTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCT                                                            <  2:292929/149‑1                                                                                                                                                CAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATG          >  2:260987/1‑148                                                                                                                                                CAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATG          >  7:181613/1‑148                                                                                                                                                CAGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGATGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAAATGCTGCTGCTCGATG          >  8:105197/1‑148                                                                                                                                                CAGCGCCAGCGCATCGAGGACGTACTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATG          >  4:213841/1‑148                                                                                                                                                 AGCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCACGCCGGCTTGCTGTCGCATCGGCAGAAGCAGATTCTCGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAA        >  6:308480/1‑149                                                                                                                                                  GCGCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCTTTGTGCTGGTGCAGGGGCCGGAACAGCTGCTGCTCCCTGAAa       >  6:55569/1‑148                                                                                                                                                    GCCAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCGGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCCTGCTGCTGTTGCAGGAGCCGCAGCTGCTGCTGCTCGATGACCCG     >  8:184071/1‑149                                                                                                                                                      CAGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAACCGGT   <  7:301977/149‑1                                                                                                                                                       AGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAACCGGTG  <  8:63997/149‑1                                                                                                                                                       AGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAACCGGTG  <  4:164322/149‑1                                                                                                                                                       AGCGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAACCGGTG  <  2:145275/149‑1                                                                                                                                                                                                                                                                                                             TGCTTCTGCCCATGCGACAGCAAGCCGGCCTGGCGCTGGGCCAGCGGCAGCAGGCGCAAGGTGGTCAGCACGTCCTCGATGCGCTGGCGCTGGTCACCGCTCAGGCGCGCGGCCAGGCTGGCCCACACCGACTTGTCGGTCTTCAGCGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5512942‑5512790 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcgccagcGCATCGAGGACGTGCTGACCACCTTGCGCCTGCTGCCGCTGGCCCAGCGCCAGGCCGGCTTGCTGTCGCATGGGCAGAAGCAGTTTCTGGAGATCGGCATGCTGCTGGTGCAGGAGCCGCAACTGCTGCTGCTCGATGAACCGGTG  >  NC_002947/5512861‑5513006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.