New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5612843 =	60 (0.940)	7 (0.110)	7/256	NT	10.2%	coding (665/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase
	?	NC_002947	5612874 =	65 (1.060)					coding (696/813 nt)	PP_4932	D‑arabinose 1‑dehydrogenase

TAACTCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5612995‑5612843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACT  >  NC_002947/5612874‑5613019                                                                                                                                                                                                                                                                                                             TAACTCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCC                                                                                                                                                        <  6:233774/149‑1   ACTCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAG                                                                                                                                                      <  2:245484/149‑1    CTCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGG                                                                                                                                                     >  3:296782/1‑149    CTCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGG                                                                                                                                                     >  3:64014/1‑149     TCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGCCAATAGCACTGATGCCGCCCGGGTGGGCGAACAGCAGCTCGAACCTGGCCTGCACCGGGTCGCCGCCCGGGGCCAGG                                                                                                                                                     >  7:102610/1‑148     TCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGG                                                                                                                                                     >  2:233362/1‑148     TCAATGCTGGCCCAGGATACGGGCGACCGAGGCCACCTTGTGGGCCAGGTGCAACCGGTTGATGGTCCCGACAATAGCACTGCAGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTCGGCTGCACCGGGACGACCCGCGGGGCCAGc                                                                                                                                                     >  6:268894/1‑147               CCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGGCCCCGGGCGTCGACCCGGTGCAGGCCAGCTTCGAG                                                                                                                                          <  1:393088/149‑1                                                                                                                   CGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGC                                       >  3:352576/1‑148                                                                                                                      AGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAG                                    >  7:215628/1‑148                                                                                                                         TGGCCTGCACCGGGTCGACGCCCGGGGCCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATT                                >  3:379019/1‑149                                                                                                                           GCCTGCACCGGGTCGACGCCCGGGGCCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTG                               <  8:215628/148‑1                                                                                                                             CTGCACCGGGTCGACGCCCGGGGCCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGT                            >  2:48092/1‑149                                                                                                                                       TCGACGCCCGGGGCCAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGC                  <  2:393088/149‑1                                                                                                                                                     CAGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGG     <  6:311248/148‑1                                                                                                                                                      AGGCCAGCTTCGAGCTGCTGTTCGCCCACCCGTGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACACCGTGGCCACCGTCGCCCGTATCCTGGGCCAGCCTTGAGTTACCTCAGGCTCCCGCCTCAGGGAC   >  2:320695/1‑149                                                                                                                                                        GCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACT  >  3:279890/1‑148                                                                                                                                                        GCCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGACAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACT  >  3:69771/1‑148                                                                                                                                                                                                                                                                                                             TAACTCAATGCTGGCCCAGGATACGGGCGACGGTGGCCACGTTGTGGGCCAGGTGCAACGGGTTGATGGTGCCGACAATAGCACTGCTGACGCCCGGGTGGGCGAACAGCAGCTCGAAGCTGGCCTGCACCGGGTCGACGCCCGGGGCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5612995‑5612843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcCAGCTTCGAGCTGCTGTTCGCCCACCCGGGCGTCAGCAGTGCTATTGTCGGCACCATCAACCCGTTGCACCTGGCCCACAACGTGGCCACCGTCGCCCGTATCCTGGGCCAGCATTGAGTTACCTCAGGCTCCCGACTCAGGGACT  >  NC_002947/5612874‑5613019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.