New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5738565 =	67 (1.050)	4 (0.070)	4/254	NT	6.2%	coding (398/747 nt)	hutC	histidine utilization repressor
	?	NC_002947	5738623 =	58 (0.960)					coding (340/747 nt)	hutC	histidine utilization repressor

GATCACGCTTGCCGAAGAAGCGGCCGGCTCCGAACGGGCGCTGGCGCTGGACATGCGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5738624‑5738565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgaTCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCGGCCACGAAGGTGCCGACCCCTTGCATGCGCACCAGCAGGCCTTCTGCGGTGAGTTCA  >  NC_002947/5738623‑5738768                                                                                                                                                                                                                GATCACGCTTGCGGAAGAAGCGGCCGGCTCCGAACGGGCGCTGGCGCTGGACATGCGTGATCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCG                                                           >  6:214615/1‑149  ATCACGCTTGCCGAAGAAGCGGCCGGCTCCGAACGGGCGCTGGCGCTGGACATGCGTGATCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCG                                                           <  5:214615/148‑1    CACGCTTGCCGAAGAAGCGGCCGGCTCCGAACGGGCGCTGGCGCTGGACATGCGTGATCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCGGCC                                                        >  4:243071/1‑149                               CGAACGGGCGCTGGCGCTGGACATGCGTGATCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCGGCCACGAAGGTGCCGACCCCTTGCATGCG                              <  3:243071/148‑1                                                          TGATCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCGGCCACGAAGGTGCCGACCCCTTGCATGCGCACCAGCAGGCCTTCTGCGGTGAGTTCA  >  2:162685/1‑149                                                                                                                                                                                                                GATCACGCTTGCCGAAGAAGCGGCCGGCTCCGAACGGGCGCTGGCGCTGGACATGCGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5738624‑5738565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgtgaTCACCTGGCAGCTATGCTGGTGTCCGCGCGCGGCAATTTCGTCGGCAATGTTGTTGACCTCGAACAGCGCCGAACGGCCCTTGGGCTCGGCCACGAAGGTGCCGACCCCTTGCATGCGCACCAGCAGGCCTTCTGCGGTGAGTTCA  >  NC_002947/5738623‑5738768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.