New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1419549	24 (0.380)	20 (0.320)	14/260	NT	31.9%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 1419636	62 (1.000)					intergenic (‑125/+11)	PP_1242/PP_1244	hypothetical protein/hypothetical protein

CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑C‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCA  >  NC_002947/1419401‑1419687                                                                                                                                                       |                                                                                                                                            caggcaGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑C                                                                                                                                             <  8:266686‑M1/147‑1 (MQ=255) cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑C                                                                                                                                             <  8:38618‑M1/149‑1 (MQ=255) cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑C                                                                                                                                             <  3:290633‑M1/149‑1 (MQ=255)  tGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTATGGGTTGCCTGGGCTG‑G‑Cc                                                                                                                                            >  7:7748‑M1/1‑148 (MQ=255)         ggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgc                                                                                                                                     >  4:249289‑M1/1‑141 (MQ=255)           aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTGTGTTGTGTTGTCGGTGGTCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGATG‑G‑Cctcttcgcgg                                                                                                                                   >  1:301618‑M1/1‑139 (MQ=255)           aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgg                                                                                                                                   <  6:142350‑M1/149‑11 (MQ=255)           aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGGTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGGTGCCTGGGCTG‑G‑Cctcttcgcgg                                                                                                                                   <  3:389814‑M1/149‑11 (MQ=255)               cGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcac                                                                                                                               >  5:365586‑M1/1‑135 (MQ=255)               cGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcac                                                                                                                               >  1:380280‑M1/1‑135 (MQ=255)                   ttCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgccc                                                                                                                           <  6:347662‑M1/149‑19 (MQ=255)                        tGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcgtgcccgcgaa                                                                                                                      <  3:249289‑M1/149‑24 (MQ=255)                        tGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcc                                                                                                                      <  8:43730‑M1/149‑24 (MQ=255)                           ggAACAGCGGGTGAGTGTTGTTTTCGCCTTTGTAGAAGAAGGGATTGCCGACTGTGGTGGGTTCTGTTGTTTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccac                                                                                                                   <  2:301618‑M1/149‑27 (MQ=255)                            gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctccca                                                                                                                    >  7:247186‑M1/1‑122 (MQ=255)                                 gCGGGTGAGTGTTGTTTTCGCCTTGTTAGAAGAAGGTCTTGCCGACTGTTGTGGGTTCTTTTGGGTTGGCGGTGGGCATTTTTTTGTTTCCCTGGATTCTGGGTTGCCTGTGCTGTC‑C‑TCTTCGCGGGCACGCCCGCTCCCACAGGTAc                                                                                                             <  4:155997/149‑1 (MQ=37)                                 gCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacaggtac                                                                                                             <  4:265409‑M1/149‑33 (MQ=255)                                  cGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacaggtact                                                                                                            <  1:161396‑M1/149‑34 (MQ=255)                                    ggTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacaggtactgt                                                                                                          <  6:365586‑M1/149‑36 (MQ=255)                                        aGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCa                                                                                                       <  8:329029/148‑1 (MQ=255)                                           gttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGc                                                                                                   <  6:245315/149‑1 (MQ=255)                                            ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTACCCCCGGTACTGTGCAGTggg                                                                                                  >  8:19500/1‑147 (MQ=255)                                                      cTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgt                                                                                        <  2:315231/149‑1 (MQ=255)                                                         ggTAGAAGCATGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                       <  7:339624/147‑1 (MQ=255)                                                         ggTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                                       <  7:276680/147‑1 (MQ=255)                                                           ttgtaGCTGGGCTTGCCGTCTGTGGTGGGTTCTGTTGTTTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCAGGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGa                                                                                   <  4:234008/145‑1 (MQ=38)                                                                  aGGTCTTGGCGTCTGTGGTGGGTTCTGTTGTGGTGTCGGTGGGCTTTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑CGTCTTCGCGGGCACGCCCGCTCCCTCAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                            <  3:137925/149‑1 (MQ=255)                                                                  aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                            <  5:141460/149‑1 (MQ=255)                                                                  aGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                            >  7:156606/1‑149 (MQ=255)                                                                  aGGTCTTGCCGACTGTGGGGGGTTCTGTTGTGTTGTCGGTGGTCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                            <  4:331310/149‑1 (MQ=255)                                                                   ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTTGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                                                           <  8:7748/149‑1 (MQ=255)                                                                   ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgg                                                                           <  3:278711‑M1/149‑67 (MQ=255)                                                                     tCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGTCAG‑G‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtggga                                                                         <  8:195875‑M1/149‑69 (MQ=255)                                                                         gcggactGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacagggtcaccaaagccgtgacgcactgcacagtacctgtgggagcg                                                                      <  7:99746‑M1/145‑72 (MQ=255)                                                                         gCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGc                                                                       <  5:253313/147‑1 (MQ=255)                                                                         gCCGACTGGGGTGGGTTCGTTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGc                                                                       <  8:247186/147‑1 (MQ=38)                                                                          ccGTCTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCGTGGATTCTGGGGTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCggg                                                                    <  4:48677/149‑1 (MQ=38)                                                                          ccGACTGGGGGGGGTTCTGTTGTGTTGTCGGGGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                                                     <  2:380280/148‑1 (MQ=38)                                                                           cGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                                                   <  4:197985/149‑1 (MQ=255)                                                                            gACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagc                                                                       <  4:266669‑M1/144‑71 (MQ=255)                                                                            gACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctcccacagggtcaccacagccgtcacgcactgcacagtacctgtgggagc                                                                       >  3:266669‑M1/1‑74 (MQ=255)                                                                                        ttCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑Cctcttcgcgggcacgcccgctc                                                                                                                       >  4:118255‑M1/1‑62 (MQ=255)                                                                                        tgcTGTTGTGTTGTGGGTGGGCATTGTTTTGTTTCCGTGGATTCTGGGTGGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCTGTGCGTGAGGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAaga                                                      <  6:134704/147‑1 (MQ=25)                                                                                           tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                            >  8:79162/1‑124 (MQ=255)                                                                                           tgttgtgttgTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                                            <  7:79162/124‑1 (MQ=255)                                                                                                                           ccTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCt                                                                                          <  6:247969/78‑1 (MQ=255)                                                                                                                           ccTGGATTCTGGGTTGCCTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCt                                                                                          >  5:247969/1‑78 (MQ=255)                                                                                                                                            cTGGGCTG‑GCC‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCa  >  7:76959/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                            CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTG‑G‑C‑TCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTGTGGGTAAATGCGACCGCA  >  NC_002947/1419401‑1419687

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.