New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3296889 =	47 (0.740)	3 (0.050)	3/254	NT	6.2%	intergenic (‑15/‑104)	PP_2898/PP_2899	hypothetical protein/hypothetical protein
	?	NC_002947	3296931 =	46 (0.760)					intergenic (‑57/‑62)	PP_2898/PP_2899	hypothetical protein/hypothetical protein

CCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCC  >  NC_002947/3296742‑3297035                                                                                                                                                     |                                                                                                                                                   ttctgcaggtgggacaggcccagcatcaggcccagtaccaccaggatgatcagaagtgaatatttgaggcgctgcacgtgtgtcatcgaatgttccttgcaacatcaggggcaaatggctcgcaacgagccgcggcaatgatacaacgg                                                                                                                                                    <  5:328‑M1/1‑1 (MQ=255)    gTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTACCAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTcac                                                                                                                                                >  8:204035/1‑149 (MQ=255)     gcaggtgggacaggcccagcatcaggcccagtaccaccaggatgatcagaagtgaatatttgaggcgctgcacgtgtgtcatcgaatgttccttgcaacatcaggggcaaatggctcgcaacgagccgcggcaatgatacaacgGTcac                                                                                                                                                <  3:15672‑M1/5‑1 (MQ=255)                gtTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCcagcag                                                                                                                                    >  6:42994/1‑149 (MQ=255)                gtTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACACCACCcagcag                                                                                                                                    >  5:246090/1‑149 (MQ=255)                    ggtcggCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGaaa                                                                                                                                <  3:288840/149‑1 (MQ=255)                        ggCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCa                                                                                                                            <  6:323909/149‑1 (MQ=255)                         gCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACGCAGCAGGAAATCCAg                                                                                                                           >  7:83711/1‑149 (MQ=255)                         gCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAg                                                                                                                           >  5:77058/1‑149 (MQ=255)                           gTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGATATCCAgcg                                                                                                                         >  5:58733/1‑149 (MQ=255)                                       tCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGt                                                                                                              >  3:170400/1‑148 (MQ=255)                                       tCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGt                                                                                                              <  4:62740/148‑1 (MQ=255)                                       tCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGAAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGt                                                                                                              >  1:285354/1‑148 (MQ=255)                                            ggatgatcagaagtgaatatttgaggcgctgcacgtgtgtcatcgaatgttccttgcaacatcaggggcaaatggctcgcaacgagccgcggcaatgatacaacgGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCg                                                                                                         >  6:328‑M1/106‑149 (MQ=255)                                              cATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGtt                                                                                                       <  7:352766/148‑1 (MQ=255)                                                  aaGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTAt                                                                                                   <  5:154892/148‑1 (MQ=255)                                                   aGGGAGAGCGGGGTCAGTAACAGCGATGTGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTa                                                                                                    <  1:98125/146‑1 (MQ=255)                                                   aGGGAGAGCGGGGTCAGTAACAGCGATGTGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTa                                                                                                    >  2:98125/1‑146 (MQ=255)                                                    gggAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCAt                                                                                                >  5:319726/1‑149 (MQ=255)                                                        gtgaatatttgaggcgctgcacgtgtgtcatcgaatgttccttgcaacatcaggggcaaatggctcgcaacgagccgcggcaatgatacaacgGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGt                                                                                                        <  1:192585‑M1/45‑1 (MQ=255)                                                        gtgaatatttgaggcgctgcacgtgtgtcatcgaatgttccttgcaacatcaggggcaaatggctcgcaacgagccgcggcaatgatacaacgGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGt                                                                                                        >  2:192585‑M1/94‑138 (MQ=255)                                                             gggTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGc                                                                                       <  6:77058/149‑1 (MQ=255)                                                              ggTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCt                                                                                      >  3:5958/1‑149 (MQ=255)                                                               gTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTc                                                                                     <  4:5958/149‑1 (MQ=255)                                                                      aCAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGa                                                                              <  4:170400/149‑1 (MQ=255)                                                                        aGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGc                                                                            >  6:228940/1‑149 (MQ=255)                                                                        aGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGc                                                                            >  8:368146/1‑149 (MQ=255)                                                                            aTGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTcacc                                                                                                                                               >  1:237936/1‑78 (MQ=255)                                                                            aTGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTcacc                                                                                                                                               <  2:237936/78‑1 (MQ=255)                                                                               cGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGc                                                                     <  8:83711/149‑1 (MQ=255)                                                                               cGAACAGCAGGGGTTTGTACATGGCGCCTCCGGCGTGGGGGCTAGGCAGCCCCATGCTT‑TCAGGCGGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGc                                                                     <  8:7825/149‑1 (MQ=255)                                                                                gAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGcc                                                                    >  1:193503/1‑149 (MQ=255)                                                                                  aCAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTTAGCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGccc                                                                   >  1:305003/1‑149 (MQ=255)                                                                                         gggTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTcaccccacccc                                                                                                                                        >  5:382004/1‑71 (MQ=255)                                                                                         gggTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTcaccccacccc                                                                                                                                        <  6:382004/72‑2 (MQ=255)                                                                                           gTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTg                                                          >  3:191338/1‑148 (MQ=255)                                                                                            tttGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGc                                                         >  1:158646/1‑148 (MQ=255)                                                                                              tGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCaa                                                       <  2:305003/148‑1 (MQ=255)                                                                                                  cATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAAc                                                  <  2:285354/149‑1 (MQ=255)                                                                                                      gTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTc                                              >  4:61639/1‑149 (MQ=255)                                                                                                        gCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGCGCCATTTTCCCCTGATGTTGCAAGGAACATTCGa                                            >  1:385991/1‑149 (MQ=255)                                                                                                         ccTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGAt                                           <  4:73223/149‑1 (MQ=255)                                                                                                          cTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGAt                                           >  6:209762/1‑148 (MQ=255)                                                                                                             cGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGATATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGac                                        <  6:58733/148‑1 (MQ=255)                                                                                                                  tGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGt                                  <  7:368146/149‑1 (MQ=255)                                                                                                                        cTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAgcg                            >  6:125833/1‑149 (MQ=255)                                                                                                                         tAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAgcgc                           >  7:370790/1‑149 (MQ=255)                                                                                                                                 cccATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAata                   >  8:183936/1‑149 (MQ=255)                                                                                                                                   cATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAatat                  >  6:368586/1‑148 (MQ=255)                                                                                                                                     tGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCa               <  7:204035/149‑1 (MQ=255)                                                                                                                                       cTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCAc              <  5:42994/148‑1 (MQ=255)                                                                                                                                             aGGCTGCCGTCACCCCACCCAGCAGGAAAGCCCGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCGCGTTGCGAGCCATTTCCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGa        <  2:385991/149‑1 (MQ=255)                                                                                                                                              ggCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGa        >  2:266760/1‑148 (MQ=255)                                                                                                                                                   aCGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGAATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATcc  <  2:270516/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCAGTTCGAGCAGGTGTTCGGTCGGCGTCTGCTGGGTGTCCAGTGCATGAAGGGAGAGCGGGGTCAGTAACAGCGATGCGAACAGCAGGGGTTTGTACATGGTGCCTCCGGCGTGGGTGCTAGGAAGCCCCATGCTT‑TCAGGCTGACGTCACCCCACCCAGCAGGAAATCCAGCGCCGGGGGCGGTGACCGTTGTATCATTGCCGCGGCTCGTTGCGAGCCATTTGCCCCTGATGTTGCAAGGAACATTCGATGACACACGTGCAGCGCCTCAAATATTCACTTCTGATCATCC  >  NC_002947/3296742‑3297035

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.