| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3947913 = | 31 (0.490) | 6 (0.120) | 5/210 | NT | 23.8% | coding (136/1797 nt) | PP_3483 | type II secretion system protein |
| ? | NC_002947 | 3947998 = | 14 (0.280) | coding (51/1797 nt) | PP_3483 | type II secretion system protein | |||||
CAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGC > NC_002947/3947770‑3948055 | cAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGttcttc < 7:82754/148‑1 (MQ=255) acgacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccaggagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCgg > 4:382269‑M1/141‑149 (MQ=255) tCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGATATTTTTGCTGGGTTCTTCGCggg > 5:400025/1‑148 (MQ=255) gacgatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCATCGCGGGc < 2:341707‑M1/11‑1 (MQ=255) gatcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATg < 8:83241‑M1/14‑1 (MQ=255) gCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGc > 7:356833/1‑149 (MQ=255) cccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCTCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGTTAGGCGGAAATTTTTGCTTGGTTCTTCGCTGGCATGcc > 4:219492/1‑149 (MQ=255) atcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGc > 3:306174‑M1/135‑149 (MQ=255) tcaactgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGcc < 1:375426‑M1/16‑1 (MQ=255) ccAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTAGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGccc > 1:123908/1‑149 (MQ=255) actgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTAGCGGGCAtgccccc < 3:31726‑M1/19‑3 (MQ=255) tgctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTc < 7:166891‑M1/21‑1 (MQ=255) cgcCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTcc < 2:127051/149‑1 (MQ=255) cgcCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGGCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGcgaa < 4:20887/149‑4 (MQ=255) ctcacaggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGcccgcgaag > 2:375426‑M1/127‑145 (MQ=255) ccGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCGAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCGCGCTCCca < 4:90182/149‑1 (MQ=255) ggTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGTCCGCTCCCACAg < 8:88278/149‑1 (MQ=255) caggggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAg > 1:55489‑M1/123‑149 (MQ=255) gggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCgg < 3:132129‑M1/9‑1 (MQ=255) gggaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCgg > 4:132129‑M1/120‑128 (MQ=255) gaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGc < 6:93735‑M1/15‑1 (MQ=255) gaatagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGc > 5:93735‑M1/118‑132 (MQ=255) tagcggcgcccgcacccctggccgagccagcctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATca < 4:253806‑M1/35‑1 (MQ=255) tCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATcaca < 6:105282/149‑1 (MQ=255) aggcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTGGTTGGGCTGCCTa > 5:22202/1‑148 (MQ=255) gcGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCCCGCCCCCCGGGACCTAACCGGTCTGGTGGCTGGATTCa > 7:311603/1‑148 (MQ=255) ggCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATAAATCCTGTgg > 7:190587/1‑148 (MQ=255) ctgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGa > 3:253806‑M1/84‑149 (MQ=255) tgcgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAg < 1:32990‑M1/67‑1 (MQ=255) aGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCCCAGGTACATCACAGGTCTGTGGGCTTCATACATCCGGTGGGAGc > 6:245887/1‑149 (MQ=255) cgacgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGc > 2:32990‑M1/81‑148 (MQ=255) acgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCggg > 7:353783‑M1/79‑149 (MQ=255) acgcgcccctgagcggagtcgcaggccatgccagaagcattcgatgcaaccccggaatctgcaaagcctgcaccgacgTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCggg > 8:166891‑M1/79‑149 (MQ=255) gCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCAt < 8:356833/149‑1 (MQ=255) aGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGc > 7:276215/1‑149 (MQ=255) gTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCcgc > 7:258690/1‑146 (MQ=255) gTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCcgc < 8:258690/146‑1 (MQ=255) gTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGaa < 8:276215/148‑1 (MQ=255) tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACa < 2:54653/116‑1 (MQ=255) tGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACa > 1:54653/1‑116 (MQ=255) ttGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCCCAGGTCTGTGGGCGGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTg > 6:331035/1‑149 (MQ=255) ttGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGGATACATCCGGTGGGAGCGGGCATGCCCGGGAAGCCGTCGGTg > 6:309775/1‑149 (MQ=255) gCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCACACAGGTACATCACAGGTCTGTGGGCGGCATACATCCTGTGGGAGCGGGCATGCACGCGCAGACGTCGGTg > 8:63588/1‑147 (MQ=255) gCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATTCATACAGTTGGAGCGGGCATTCCCGCGAAGACGTCGGTGCAGGCGTTg > 4:31726/1‑148 (MQ=39) tGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTACCACAGGTACATCACAGGTCTGTGGGCTGCAAACATCCTGTGGGAGCGGGCATGCCCGCGAACACGTCGGTGCAGGCTTTg > 7:102258/1‑145 (MQ=255) gggCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCCCTCCCACACGGACATCACAGGTCTCTGGGCTGCATAGATCCAGTGGGAGCGGGCATGCCCGCGAAGACGACGGGGCCGGCGTTGAAGaa > 1:341707/1‑148 (MQ=255) gCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGc > 5:291096/1‑116 (MQ=255) gCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGc < 6:291096/116‑1 (MQ=255) cAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCCTTGGAGGCTTTGCAGATTCCg > 7:364087/1‑149 (MQ=255) gTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTg > 1:4165/1‑149 (MQ=255) ggTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAAt < 8:190587/149‑1 (MQ=255) tGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGc > 8:89619/1‑148 (MQ=255) TCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg > 1:50336‑M1/1‑70 (MQ=255) TCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCgg < 2:50336‑M1/70‑1 (MQ=255) | CAGGGTCAGGCCCAGGCGCCGGGTGAAGGTGTCGGGGGTGTCGCAGGCCAGGCGTTCCAGGCAGTCGAGCAGGCGCTCGTCAGTGGCTTGCAGACGGGCCTGGGCCAGGAGGTCGC‑GGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGC > NC_002947/3947770‑3948055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |