| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | 100% | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 1 (0.020) | 45 (0.720) +GCC |
36/260 | NT | 97.9% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 1 (0.020) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
TGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑G‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5555464‑5555749 | tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccc > 7:65463‑M1/1‑145 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggcccc < 6:97735‑M1/148‑6 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGGATAGC‑Ggccccggcaatttg > 4:307036‑M1/1‑135 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttcc > 6:3438‑M1/1‑134 (MQ=255) aGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttcc > 6:8841‑M1/1‑134 (MQ=255) ggAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTAGCGAAAGGGCCGCATAGC‑Ggcccccgcaatttacg > 6:147155‑M1/1‑133 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgc > 8:3649‑M1/1‑132 (MQ=255) gAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgc < 7:3649‑M1/149‑18 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgt < 5:3438‑M1/149‑22 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgt < 5:8841‑M1/149‑22 (MQ=255) ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgc < 4:380501‑M1/149‑26 (MQ=255) ggTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatg > 8:319256‑M1/1‑124 (MQ=255) ggTCCGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgc < 8:83397‑M1/149‑26 (MQ=255) tCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaa < 2:10176‑M1/149‑28 (MQ=255) ggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctg < 7:319256‑M1/149‑36 (MQ=255) gATTAGTCCGGCGCCCATGAGCAACTCCTTTAGTCATGTGGCGCCGACAGCATACCAACACCGCTCCGGGGGGGGAGCGGCCTGGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctg < 4:205057‑M1/149‑42 (MQ=255) gTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatg > 1:80532‑M1/1‑103 (MQ=255) tCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgc < 4:335273‑M1/149‑48 (MQ=255) aCATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgcatagcagccccag < 6:183753‑M1/149‑56 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcccttt < 1:48661‑M1/145‑56 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagcccttt > 2:48661‑M1/1‑90 (MQ=255) gAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCCAAAGGGCCCCATAGC‑Ggccccggcaatttacgcgtgtatgcaacaaaacttgggcagctatgcagcccattcgc > 6:127005‑M1/1‑90 (MQ=255) tCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCCTAGC‑Ggcccccgcaatttacgcgtgtttgcaacaaacctggggctgctattcagcccattagcgccacaac > 1:219152‑M1/1‑83 (MQ=255) tttGTCATGTGGCGCGCACAGAATACCAACACGGCTCCGGGGTGGTAGCGGCTTTGTGGCGCTAATGGCCGGCTTAGC‑GGCCCCGGCAATTTCCGCGTGTATCCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGcc < 4:237356/148‑1 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttgcgcgggtatgcaacaaaccaggggctgcgatgcagccctttcgcgccacaaggccccca > 7:352371‑M1/1‑75 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttc > 7:121277‑M1/1‑75 (MQ=255) tCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttc < 8:121277‑M1/131‑57 (MQ=255) tCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Cgcccccgcaatttccccgtgtatgcaacaaaccaggggctgctatgcagcccgttcgcgccacaaggcccacaaaggaccg > 6:177744‑M1/1‑68 (MQ=255) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttacgcgggtttggaaaaaacctggggctggtatgcagcccgttagcgacccaaagcccacaaaggtccgcgcc > 4:89578‑M1/1‑64 (MQ=255) aGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggct > 7:74737‑M1/1‑60 (MQ=255) cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctt > 5:396491‑M1/1‑58 (MQ=255) cGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaac < 2:273271‑M1/149‑103 (MQ=255) gCTCTGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaact < 7:159358‑M1/149‑104 (MQ=255) gttcgggCTTGTGTCGCGTAAGGGCCGGATATCGGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccacgcaggcttcaggcccggaactggcccaggctg < 2:80532‑M1/146‑115 (MQ=255) gtgtCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagct < 6:396491‑M1/148‑125 (MQ=255) tgtCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggtgcgcagctga > 8:147624‑M1/1‑23 (MQ=255) tgtCGCGAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctga < 8:74737‑M1/149‑127 (MQ=255) tCGCGAAAGGGCCGCATAGC‑Ggccccggcaaattccgcgtgtatgcaacaaacctggggctgctatgcagccctttagcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaacaggcccaggcaggcgcgcagcagagc > 4:350946‑M1/1‑21 (MQ=255) tCGCAAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagc > 5:256920‑M1/1‑21 (MQ=255) cgAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggc > 3:73722‑M1/1‑18 (MQ=255) cgAAAGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggc < 4:73722‑M1/130‑113 (MQ=255) aGGGCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgccagc < 8:352371‑M1/149‑136 (MQ=255) gggCCGCTATGC‑Ggcccgggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgc > 3:356102‑M1/1‑13 (MQ=255) gggCCGCTATGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggctacaggcccggaactggcccaggctggcgcgcagctgagccgc > 2:342321‑M1/1‑13 (MQ=255) ggCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagat > 4:304976‑M1/1‑12 (MQ=255) gCCGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatc > 7:240138‑M1/1‑11 (MQ=255) cGCATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccaaaaaggaccgcgcaggcttcaggccaggaactggcccaggctggcgcgcagcagagccgccagatcatc > 3:285804‑M1/1‑9 (MQ=255) cATAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatcca < 5:113102‑M1/149‑143 (MQ=255) tAGC‑Ggccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccgccagatcatccagc < 3:304976‑M1/149‑145 (MQ=255) | TGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATAGC‑G‑‑‑CCGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCAGATCATCCAGC > NC_002947/5555464‑5555749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |