| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1731163 = | 45 (0.710) | 3 (0.060) | 3/210 | NT | 8.2% | intergenic (‑76/+115) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase |
| ? | NC_002947 | 1731255 = | 32 (0.640) | intergenic (‑168/+23) | dapE/PP_1526 | succinyl‑diaminopimelate desuccinylase/beta‑(1‑3)‑glucosyl transferase | |||||
GAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGC > NC_002947/1731116‑1731398 | caaaTCAGAGGGGCGTTATCTTATATAAAATGGTTTCGGGCAGCACGGCCCATTCGCGTGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTTCACAGGTc > 6:394901/2‑149 (MQ=255) cggggCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCa < 7:297376/146‑1 (MQ=255) gggtttATCTAATATCAATTGGTTGCGGGCACCACGGCCCAGGCGCGGGCACCCCCGCCCCCCCTGGTCGTCCACAGCTCTCACCGCCTGTGCCACGCCGGGGGG‑TGGGGGGGGGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCaa < 8:206091/145‑1 (MQ=255) ttATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTc < 4:372164/149‑1 (MQ=255) tCTTATATCAAATGGTTTCGGGCAGCCCGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCaa < 3:258007/148‑1 (MQ=255) tCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAg > 8:80121/1‑149 (MQ=255) cTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGc > 2:248533/1‑149 (MQ=255) ttATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCAAGCCCGCTCACAAAGGTACTGCACAGCTCTGAAATCCAGTTCCAAGCCTGTGGG‑AGCGGGCGTGCCCGCGAATGCGCTGCACAGGTCGGCCCAGGCAACTTAAAGcc > 3:283510/1‑149 (MQ=38) aaaTGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTgcg > 5:250708/1‑149 (MQ=255) gggCAGCACGGCCCATTCGCGGGCACGCCCGCGCCCACAGGTTCTGCACAGCGCTGCACGCCTGTGCCACGCCGGTGGG‑CGCGGGCGTGCCCGCGTATGGGCTGCGCAGGTCGGCCCAGGCAACGTCAAGCCTGCTGCGCGTGGGCAGc > 5:1446/1‑149 (MQ=37) ggCCCATTCGCGGGCACGCCCGCTCCCACGGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGcc > 6:163628/1‑141 (MQ=255) ggCCCATTCGCGGGCACGCCCGCTCCCACGGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGcc < 5:163628/141‑1 (MQ=255) TTCGCGGGCCCGCCCGCTCCCACAGGTCCTCCACCGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCtt > 6:250708‑M1/1‑149 (MQ=255) TCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTg < 6:227140‑M1/149‑1 (MQ=255) GCGGGCACGCCCGCTCCCAACGGGAATGCACCCCTCTGAACCCCTGTGCCAAGCCGGGGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTggg > 8:163747‑M1/1‑149 (MQ=255) ACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcga < 4:155875‑M1/149‑1 (MQ=255) GCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgac < 8:112923‑M1/148‑1 (MQ=255) gcccgctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgac > 6:228916‑M2/77‑148 (MQ=255) gctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCa < 5:91047‑M2/67‑1 (MQ=255) gctcccaccggcttggcacaggcgttcagagctgtgcagtacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCa > 6:91047‑M2/73‑139 (MQ=255) CTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAgg > 1:248533‑M1/1‑149 (MQ=255) CCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAAc < 6:286243‑M1/149‑1 (MQ=255) ACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGCACGc < 8:139770‑M1/149‑1 (MQ=255) ccggTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGcc < 1:298389/147‑1 (MQ=255) gttcttcactGCGCTGAACGCC‑GTGTCCACGCGGTGGGTAGGGGGGTTGCCGGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATc < 8:319210/143‑1 (MQ=255) gTACTTCCCAGGACTGATCGCCTGGGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGTTCGGCCCAGGCAACTTCAAGGCTGCTGCGCTTGGGCAGCGTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATc < 4:283510/149‑1 (MQ=255) gTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATc > 8:121530/1‑149 (MQ=255) tACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcg > 6:95623/1‑131 (MQ=255) tACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcg < 5:95623/131‑1 (MQ=255) cTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCAc > 5:22424/1‑148 (MQ=255) cTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCAc < 4:139930/148‑1 (MQ=255) aGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCAc > 2:11617/1‑142 (MQ=255) aGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCAc < 1:11617/142‑1 (MQ=255) gCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTg > 4:239635/1‑149 (MQ=255) ctGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCca > 1:163311/1‑149 (MQ=255) tGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGc > 3:292378/1‑77 (MQ=255) tGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGc < 4:292378/77‑1 (MQ=255) tGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCca > 5:184320/1‑148 (MQ=255) aaCGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgacga > 3:23963/1‑120 (MQ=255) aaCGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGcgacga < 4:23963/120‑1 (MQ=255) aaCGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCcac < 7:80121/147‑1 (MQ=255) ccTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAgg < 6:22424/149‑1 (MQ=255) cTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAgg > 7:310513/1‑148 (MQ=255) tacctgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTg > 8:224386‑M2/34‑149 (MQ=255) gCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCaa > 4:44633/1‑142 (MQ=255) gCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCaa < 3:44633/142‑1 (MQ=255) tgtgggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCAc > 6:343435‑M2/30‑148 (MQ=255) gggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCACCTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAg > 6:350868‑M2/27‑148 (MQ=255) ggagcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGc < 3:155875‑M2/123‑1 (MQ=255) agcgggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCaa > 7:31444‑M2/24‑148 (MQ=255) gggcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATc < 6:1446‑M2/129‑1 (MQ=255) gggcgtgcccgcgaatgggcTGCACAGGGCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATc < 5:394901‑M2/129‑1 (MQ=255) gcgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGc > 4:235292‑M2/19‑149 (MQ=255) cgtgcccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGcc < 3:239635‑M2/132‑1 (MQ=255) ccgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCa < 7:112923‑M2/137‑1 (MQ=255) cgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAAc > 1:68857‑M2/12‑122 (MQ=255) cgcgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAAc < 2:68857‑M2/111‑1 (MQ=255) cgaatgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGaa < 5:228916‑M2/140‑1 (MQ=255) tgggcTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAgcgc < 8:31444‑M2/144‑1 (MQ=255) | GAAATCTGAGGGGCGTTATCTTATATCAAATGGTTTCGGGCAGCACGGCCCATTCGCGGGCACGCCCGCTCCCACAGGTACTGCACAGCTCTGAACGCCTGTGCCAAGCCGGTGGG‑AGCGGGCGTGCCCGCGAATGGGCTGCACAGGTCGGCCCAGGCAACTTCAAGCCTGCTGCGCTTGGGCAGCCTTTTCTGCGGGCTTGGGCAGCGACGACAGGAACGCCATCACCAGCGCTGCCACATAAGGCAACGACTGCACCAGCAACATCGCCACCCAGAAGCGC > NC_002947/1731116‑1731398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |