New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4660101 | 58 (0.910) | 3 (0.050) | 3/254 | NT | 5.4% | coding (459/1362 nt) | nuoF | NADH‑quinone oxidoreductase subunit F |
? | NC_002947 | = 4660153 | 49 (0.810) | coding (511/1362 nt) | nuoF | NADH‑quinone oxidoreductase subunit F |
GAGGGCATGCTGATCAGCGCCCGCGCCCTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGG > NC_002947/4660006‑4660298 | gAGGGCATGCTGATCAGCGCCCGCGCCCTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCACCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCa < 7:281883/148‑1 (MQ=255) aTGCTGATCAGCGCCCGCGCCCTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGttt < 1:233104/149‑1 (MQ=255) gCTGATCAGCGCCCGCGCCCTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGtttc > 1:328137/1‑148 (MQ=255) cTGATCAGCGCCCGCGCCCTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGtttcga < 5:166262/149‑1 (MQ=255) cTGATCAGCGCCCGCGCCCTGAAGCCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAATAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGtttcga < 5:311360/149‑1 (MQ=255) cgcccTTAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGGCATCGATGTAGCCAAGGACGGCGGCCTGGTGGGCAAGAACATCCTGGGGAGCGGTTTCGATTTCGAGCTGTTCg < 1:48691/149‑1 (MQ=255) gcccTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGt < 2:257109/149‑1 (MQ=255) cTGAAGGCCTGCCGCGGCTTGATGTTCCTGCGTGGCGAGTACACCAGCGCAGCGATAAGCCTCAGCGGCGGGAGCGCTGAGGCCAGGGCCGCCGGGCTGGTGGGGAGGGGCAGCGTGGGCAGCGGTGGCGGGTTCGAGGGGTTCGTgga > 4:271940/1‑147 (MQ=255) cTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTg > 1:369006/1‑149 (MQ=255) ccGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAg < 5:310792/149‑1 (MQ=255) ccGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAg > 1:256484/1‑149 (MQ=255) cTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGc > 3:225966/1‑148 (MQ=255) aTCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACAt > 6:175936/1‑149 (MQ=255) aTCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACAt > 5:347975/1‑149 (MQ=255) aTCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACAt > 3:226909/1‑149 (MQ=255) cTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCt > 4:389169/1‑149 (MQ=255) ccTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATc < 5:130192/145‑1 (MQ=255) ccTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTg < 3:29893/147‑1 (MQ=255) cTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCg < 2:256484/148‑1 (MQ=255) cTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCg < 2:328137/148‑1 (MQ=255) cTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTAGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCg < 8:365233/148‑1 (MQ=255) gTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTg > 6:237874/1‑147 (MQ=255) tGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCacac > 2:255066/1‑120 (MQ=255) tGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCacac < 1:255066/120‑1 (MQ=255) tGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTg > 3:177871/1‑146 (MQ=255) gAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAAc > 6:100785/1‑149 (MQ=255) caccacCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCgcgc < 4:226909/149‑1 (MQ=255) accaccGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCt > 4:293936/1‑149 (MQ=255) accaccGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCt < 3:389169/149‑1 (MQ=255) ccaccGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTg < 6:347975/149‑1 (MQ=255) cAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAAc < 2:369006/149‑1 (MQ=255) aGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACt > 1:210932/1‑149 (MQ=255) aaaaCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCt < 2:104129/148‑1 (MQ=255) aaCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTga > 7:358238/1‑147 (MQ=255) aCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAgcggttgaggtttttcgctgcggtggtgtactcgccacgcaggaagatgtagccgcggtaggccttcagggcgcgggcgctgat < 4:286625‑M2/147‑85 (MQ=255) aCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGaa < 3:271940/149‑1 (MQ=255) aCCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGaa < 3:293936/149‑1 (MQ=255) ccTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAgcggttgaggtttttcgctgcggtggtgtactcgccacgcaggaagatgtagccgcggtaggccttcagggcgcgggcgctgatcag < 2:115834‑M2/149‑88 (MQ=255) cTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAgg > 7:125787/1‑149 (MQ=255) tCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGTCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGgc > 5:270897/1‑149 (MQ=255) tCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACcgc > 8:260447/1‑127 (MQ=255) tCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACcgc < 7:260447/127‑1 (MQ=255) tCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGgc > 7:278189/1‑149 (MQ=255) aaCCGCGACATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAATAACATCCTTGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGGCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTTGAAGgc < 1:211771/147‑1 (MQ=255) aCCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGgccgc < 8:125787/149‑1 (MQ=255) gcgcCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCcgccgc > 1:368357/1‑149 (MQ=255) gcCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCgcgc < 4:225966/149‑1 (MQ=255) cATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGcc > 4:389484/1‑148 (MQ=255) aTGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCAGCCGCGCCAACCcg > 5:268025/1‑149 (MQ=255) aGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCgcgc < 5:100785/148‑1 (MQ=255) gCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAgcggttgaggtttttcgctgcggtggtgtactcgccacgcaggaagatgtagccgcggtaggccttcagggcgcgggcgctgatcagcatgccctcgaccagcagatgg > 1:115834‑M2/1‑40 (MQ=255) gCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTc < 2:285231/149‑1 (MQ=255) ctgGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTgc > 6:395119/1‑149 (MQ=255) ggCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTgccgc > 7:33909/1‑149 (MQ=255) aGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGtt < 8:278189/149‑1 (MQ=255) cATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCg > 5:263876/1‑149 (MQ=255) cTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGtgtg < 5:237874/149‑1 (MQ=255) gggCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTggg > 4:77312/1‑149 (MQ=255) ggCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTgggg < 6:263876/149‑1 (MQ=255) ggCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTgggg > 2:355979/1‑149 (MQ=255) | GAGGGCATGCTGATCAGCGCCCGCGCCCTGAAGGCCTACCGCGGCTACATCTTCCTGCGTGGCGAGTACACCACCGCAGCGAAAAACCTCAACCGCGCCATCGATGAAGCCAAGGCCGCCGGCCTGCTGGGCAAGAACATCCTGGGCAGCGGTTTCGATTTCGAGCTGTTCGTGCACACCGGTGCAGGCCGCTACATCTGCGGTGAAGAAACCGCGCTGATCAACTCGCTGGAAGGCCGCCGCGCCAACCCGCGCTCCAAGCCGCCCTTCCCTGCCGCCGTTGGCGTGTGGGG > NC_002947/4660006‑4660298 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |