| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,741,508 | A→T | 10.9% | intergenic (‑179/+49) | PP_5038 ← / ← PP_5039 | lipoprotein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,741,508 | 0 | A | T | 10.9% | 175.5 / 10.4 | 64 | intergenic (‑179/+49) | PP_5038/PP_5039 | lipoprotein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (30/27); new base T (4/3); total (34/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.33e-01 | |||||||||||
TGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGG > NC_002947/5741368‑5741654 | tGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCCCCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCg > 5:377729/1‑149 (MQ=255)tGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCg > 8:92245/1‑149 (MQ=255) tGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCtt < 6:356247/149‑1 (MQ=255) tGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTAGGATGGCCACTACTGTGCGATTAAT‑‑‑AACAAAGCAATAATCATGCGCCCAATAAAAAAGGCCGCCCCCAAAGGGAGCGGccgt > 4:198540/1‑147 (MQ=255) aCCTTCGACGGGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGc < 3:284711/149‑1 (MQ=255) ccTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCTCCCATTGGGGGCGGCCttttt < 1:316926/149‑4 (MQ=255) gACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTcgc < 3:135352/148‑1 (MQ=255) cGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGCCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGCCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGAt < 7:285865/149‑1 (MQ=255) aaaaTACCTCCCCGGTTCCCTGCCCCACCCCCTATTTCCCAAAACCATTTGTCGGATGGCCACTAATGTGCGATTAATCTCCACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGAt < 1:314673/148‑1 (MQ=255) aaaTCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑Ct < 2:96034/148‑1 (MQ=255) ccctcccAGGTTCCCTGGCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGcaca > 5:46984/1‑149 (MQ=255) gTTCCCTGCCCCACCCACTATGTCCCTACACCATTGGTAGGATGGCCCCTACTGTGCGATTAAT‑‑‑CACAACGCATTATTCATGCGCCCAATAAAAAAGGCCGCCCCCAAGTCGAGCTGCCTTTCGTCCAGCTGC‑CTGCACAC‑CAGGcccc > 5:387124/1‑149 (MQ=255) ttCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGAt < 8:84867/130‑1 (MQ=255) ttCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGAt > 7:84867/1‑130 (MQ=255) cccTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAGT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTg > 8:24134/1‑149 (MQ=255) cccTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCACCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCtt < 4:134357/148‑1 (MQ=255) ccTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CATAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTg < 5:355225/148‑1 (MQ=255) ccTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTgg > 5:331351/1‑149 (MQ=255) ccccACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGc < 6:113656/147‑1 (MQ=255) cccACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCATTTCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCt > 8:245393/1‑148 (MQ=255) cTATGTCCCTACACCATTGGTCGGATGGTCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCgg > 5:363655/1‑149 (MQ=255) ccTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAg > 6:55077/1‑149 (MQ=255) ccTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAg > 5:112973/1‑149 (MQ=255) ccTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAg > 1:60830/1‑149 (MQ=255) cTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAgg < 6:112973/149‑1 (MQ=255) cTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAgg < 2:60830/149‑1 (MQ=255) acacCAATGGTCGGATGGCCACTACTGGGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCt < 8:61493/149‑1 (MQ=255) cacCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGAGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTc > 6:81204/1‑149 (MQ=255) cATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCTCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTc > 3:38480/1‑146 (MQ=255) aTTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAg > 2:257537/1‑148 (MQ=255) tGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCTCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCa < 4:38480/149‑1 (MQ=255) gCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCAt < 6:331351/148‑1 (MQ=255) actactGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATctct > 6:107176/1‑149 (MQ=255) ctGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCg < 6:46984/148‑1 (MQ=255) ctGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGACTCCAGCAAAAAGTCCATCTCTTc < 7:92245/147‑1 (MQ=255) tgCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTgg > 6:229194/1‑149 (MQ=255) tgCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTg < 2:26253/148‑1 (MQ=255) tgCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTg > 1:26253/1‑148 (MQ=255) tgCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTg < 5:107176/148‑1 (MQ=255) tAAT‑‑‑CACAACTCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCg < 3:223085/149‑1 (MQ=255) aaT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTg > 4:179954/1‑141 (MQ=255) aaT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTg < 3:179954/141‑1 (MQ=255) aaT‑‑‑CAAAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAGCCTGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTc < 1:116903/148‑1 (MQ=255) t‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGcc > 4:350067/1‑149 (MQ=255) aGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTc > 4:82377/1‑147 (MQ=255) gCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAg < 6:363655/149‑1 (MQ=255) tCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAgg < 5:229194/149‑1 (MQ=255) cccAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggt > 6:153001/1‑149 (MQ=255) aaaaaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGaa < 3:350067/149‑1 (MQ=255) aaaaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTcc > 1:193585/1‑86 (MQ=255) aaaaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTcc < 2:193585/86‑1 (MQ=255) aaaaGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAg > 5:29752/1‑149 (MQ=255) aGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgcgc > 7:15932/1‑149 (MQ=255) aGGCCGCCCCCAATGGGAGCGGCCTAGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGCCCTCAGAACCGCGACCCAGGCTCCAGCAAAAAGTCCAGCTCTTCTCTGGTGCGCGTCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgggc < 6:387124/149‑1 (MQ=255) ggCCGCTCCCATTGGGGGCGGCCTTGCGTCGCGATGCTCTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAgcgc > 1:70262/1‑149 (MQ=255) ggCCGCTCCCATTGGGGGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGcc > 6:27000/1‑149 (MQ=255) ccgctCCCATTGGGGGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcgg > 4:4633/1‑139 (MQ=255) ccgctCCCATTGGGGGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTtgcggtgcgg < 3:4633/139‑1 (MQ=255) ccgctCCCATTGGGGGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGccc > 2:266183/1‑148 (MQ=255) ccgccCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGccc > 2:372235/1‑148 (MQ=255) cgccCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCg > 5:147096/1‑148 (MQ=255) cgccCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCg > 8:112261/1‑148 (MQ=255) ccATTGGGGGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCg < 1:266183/148‑1 (MQ=255) ccAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCgg > 2:393619/1‑149 (MQ=255) aaTGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCggg > 1:94105/1‑148 (MQ=255) | TGCAGTGACCTTCGACGTGAAAATCCCTCCCAGGTTCCCTGCCCCACCCCCTATGTCCCTACACCATTGGTCGGATGGCCACTACTGTGCGATTAAT‑‑‑CACAAAGCATTAATCATGCGCCCAATAAAAAAGGCCGCCCCCAATGGGAGCGGCCTTGCGTCGCGATGC‑CTGCACAG‑CAGGCCCCTTGGGCCTCAGAACCGGGACCCAGGCTCCAGCAAAAAGTCCATCTCTTCGCTGGTGCTCGGCCGCTCCAGCACCAGGTTGCGGTGCGGGAAGCGCCCGAAGCGGG > NC_002947/5741368‑5741654 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |