| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,827,954 | C→G | 5.2% | intergenic (+156/+43) | mtgA → / ← rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,827,954 | 0 | C | G | 5.2% | 253.2 / 3.3 | 77 | intergenic (+156/+43) | mtgA/rpoH | monofunctional biosynthetic peptidoglycan transglycosylase/RNA polymerase factor sigma‑32 |
| Reads supporting (aligned to +/- strand): ref base C (31/42); new base G (2/2); total (33/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.34e-01 | |||||||||||
CCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATGCAGCGTG > NC_002947/5827807‑5828099 | ccggcccTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCa > 3:175610/1‑149 (MQ=255) ggcccTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCAcc < 6:20007/149‑1 (MQ=255) gcccTTTCGCGGGTAAACCCGCTCCTACGGGCGACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCAccc > 2:24238/1‑149 (MQ=255) ccTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCa > 6:98236/1‑149 (MQ=255) cTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCAt < 5:232528/149‑1 (MQ=255) gcgGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGc < 5:98236/149‑1 (MQ=255) aaCCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGc < 3:164574/149‑1 (MQ=255) cccGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCGCCGCCTACAGCCAACCGAATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGATCACCCCGTAGGGCCAGCGGCt > 1:91373/1‑149 (MQ=39) cccGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCtt < 5:32146/149‑1 (MQ=255) ccGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCttt > 6:151315/1‑149 (MQ=255) cgcgCCTCCGGGCAACCGCATCCCCGGCCTCCTCGCGCGCAACCCCG‑CGCCTACAGGCAACCGCAGCCCCTGT‑AGGAGCGGGCTTACCCGCGCAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCGGGCCCTATGGGGTGAGCGGCtttt < 7:300283/149‑1 (MQ=255) cGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCtttt < 6:81450/149‑1 (MQ=255) cTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCt < 1:215177/149‑1 (MQ=255) cTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCttt < 6:186284/148‑1 (MQ=255) cTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCtt < 6:92198/147‑1 (MQ=255) cTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTa < 5:237017/149‑1 (MQ=255) cTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTa < 7:301417/149‑1 (MQ=255) gggCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTATTTACAAc > 2:381962/1‑149 (MQ=255) gCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCACCCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACATccc > 7:337583/1‑149 (MQ=255) cAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCa < 2:63261/149‑1 (MQ=255) aCCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGa < 5:372594/149‑1 (MQ=255) ccGCATCCCCGGCCACCTCGCGGGCAAACCCG‑CGCCTACAGGCAAACCCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCACGGGCGTTTCTTTACAACCCAgcc > 6:230382/1‑147 (MQ=38) cGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAgg > 4:185325/1‑149 (MQ=255) cGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAgg < 6:40607/149‑1 (MQ=255) ctcttcGCGGGTAAGCCCG‑CTCCTACAGGGGATGCGGTTGCCTGT‑AGGCGCGGGTTTGCCCGCGAGGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGc > 8:193363/1‑149 (MQ=17) cctcGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGTGAGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACACCCCAGAGTCAATCAGGCAGc > 1:74922/1‑148 (MQ=255) gcgGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATc < 1:24238/147‑1 (MQ=255) gCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGCCCAGCGGCTGTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGAGc > 8:236148/1‑148 (MQ=255) aaaCCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCtt > 3:73541/1‑149 (MQ=255) aaaCCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCtt < 4:1193/149‑1 (MQ=255) cccG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCGTAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGAc < 2:91373/149‑1 (MQ=255) ccG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCt > 2:395722/1‑107 (MQ=255) ccG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCt < 1:395722/107‑1 (MQ=255) cg‑cgCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCACTGATCGCTGCCtgattga < 7:357005/149‑7 (MQ=39) g‑cgcCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGc < 3:319499/96‑1 (MQ=255) g‑cgcCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGc > 4:319499/1‑96 (MQ=255) g‑cgcCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCtt < 1:336454/149‑1 (MQ=255) cgcCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTg < 6:339280/149‑1 (MQ=255) cgcCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTg < 5:53604/149‑1 (MQ=255) tACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCa > 4:35868/1‑149 (MQ=255) cAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATc < 3:14376/149‑1 (MQ=255) aGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCg > 3:268795/1‑149 (MQ=255) aGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCg > 7:83144/1‑149 (MQ=255) aGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCg > 2:384034/1‑149 (MQ=255) gCAACCGCATCCCCTGT‑AGGAGCGGCCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATAGCa > 1:163846/1‑149 (MQ=255) cAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCAt < 2:74922/149‑1 (MQ=255) cGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCAttctt < 8:337583/149‑1 (MQ=255) aTCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTtctc < 5:151315/149‑1 (MQ=255) cccTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCaa > 1:285586/1‑149 (MQ=255) ccTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACaa > 4:238820/1‑89 (MQ=255) ccTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACaa < 3:238820/89‑1 (MQ=255) cTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACt > 3:328174/1‑149 (MQ=255) t‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGc < 4:328174/149‑1 (MQ=255) ggAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGa < 5:287042/149‑1 (MQ=255) aCCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCa < 1:381962/147‑1 (MQ=255) cccGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGc < 1:157541/148‑1 (MQ=255) ccGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGcc > 7:133920/1‑148 (MQ=255) gcgAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGAt < 8:19454/149‑1 (MQ=255) cgAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATa < 1:384034/149‑1 (MQ=255) aaGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACg < 8:83144/149‑1 (MQ=255) gCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCtt < 2:89818/50‑1 (MQ=255) gCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCtt > 1:89818/1‑50 (MQ=255) ggCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACtt < 4:268795/149‑1 (MQ=255) gCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATAAGCTGTACTTg > 3:104053/1‑149 (MQ=255) gCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGc > 2:72448/1‑149 (MQ=255) aagaaaaGCCGCTGGCCCTATGGGGTGAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTgg > 6:69389/4‑108 (MQ=37) aagaaaaGCCGCTGGCCCTATGGGGTGAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTgg < 5:69389/105‑1 (MQ=37) aaaaaaGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCa > 5:156387/1‑149 (MQ=255) aaaaaGCCGCTCACCCCATAGGGCCAGCTGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCAt < 8:226526/149‑1 (MQ=255) aaaaGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATg > 2:99232/1‑149 (MQ=255) aaaaGCCGCTCACCACATAGGGCGAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATg < 4:104053/149‑1 (MQ=255) aaaGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATg > 7:290419/1‑148 (MQ=255) aaGCCGCTGGCCCTATGGGGTGACCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCAGTACTTGTCTGCAAGTTCATg > 1:182925/1‑147 (MQ=255) gCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAAt < 8:123789/106‑1 (MQ=255) gCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAAt > 7:123789/1‑106 (MQ=255) cGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATGCAGCGt < 2:49017/149‑1 (MQ=255) gCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCATCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATGCAGCGTg < 7:193363/149‑1 (MQ=255) | CCGGCCCTTTCGCGGGTAAACCCGCTCCTACGGGCAACCGCATCCCCGGCCTCCTCGCGGGCAAACCCG‑CGCCTACAGGCAACCGCATCCCCTGT‑AGGAGCGGGCTTACCCGCGAAGAGGCCGGCAAAGCCAAACAAAAAAGCCGCTCACCCCATAGGGCCAGCGGCTTTTCTTTACAACCCAGACTCAATCAGGCAGCGATCAGTGCCTTGACCTTGTTCATCGCATTCTTCTCCAACTGGCGAATACGCTCAGCCGATACGCTGTACTTGTCTGCCAGTTCATGCAGCGTG > NC_002947/5827807‑5828099 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |