| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,866,696 | G→T | 6.9% | intergenic (+19/+38) | PP_5140 → / ← thyA | MerR family transcriptional regulator/thymidylate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,866,696 | 0 | G | T | 6.9% | 247.3 / 6.3 | 81 | intergenic (+19/+38) | PP_5140/thyA | MerR family transcriptional regulator/thymidylate synthase |
| Reads supporting (aligned to +/- strand): ref base G (34/41); new base T (4/2); total (38/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.12e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
AGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCGG > NC_002947/5866553‑5866843 | aGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAAccc < 1:29744/149‑1 (MQ=255) cggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCcgcg < 1:206962/147‑1 (MQ=255) ggcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTTCACCCGCGAag < 1:160911/149‑1 (MQ=255) gcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGaa > 5:274819/1‑147 (MQ=255) gcggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAaga < 5:61334/149‑1 (MQ=255) cggcgCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAagag > 7:347155/1‑149 (MQ=255) gcgcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGt < 8:358443/149‑1 (MQ=255) gcgcTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGt < 6:261897/149‑1 (MQ=255) cTGCAACGGGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGTGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAg < 8:258136/149‑1 (MQ=255) cAACGCGCAGGGTCGTGAATGCGCGATGATGCAGCAACTGGAGACAAACTGTGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGTGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTc < 8:71171/149‑1 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTc < 1:264938/149‑1 (MQ=255) cAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTc > 7:305311/1‑149 (MQ=255) aaCGCGCAGGGGAGTGAATGCGCTATCTTTCAGCAACTGGAGAAAATCGGGGCGTTATCGGTACCGTATACCGAACATTCCCTTGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAaga < 6:156117/139‑1 (MQ=255) aaCGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTTGGGAGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAaga > 5:156117/1‑139 (MQ=255) aaCGCGCAGGGGAGAGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTG‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTc > 4:389779/1‑148 (MQ=255) aGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATa < 2:173724/149‑1 (MQ=255) gggagggaATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATaga < 7:209390/149‑1 (MQ=255) gggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATaga < 4:178216/149‑1 (MQ=255) ggtgtgtATGCGCGATATTTGATAAACTGGATAAAAACGGGGGGTTATCGGTACCGTAAACCTAAAATTCCAATGTGGGGCGGAGCCTACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATaga < 1:310084/146‑1 (MQ=255) ggAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATagag < 6:274819/149‑1 (MQ=255) gAGTGAATGCGCGATCTTGCTGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAg < 2:194019/134‑1 (MQ=255) gAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAg > 1:194019/1‑134 (MQ=255) aaTGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑Ta > 2:341765/1‑148 (MQ=255) aTGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TAt > 1:129187/1‑148 (MQ=255) ttGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGCTCTAACAATAGAGATC‑TATCAGACCGCCAt < 3:10486/149‑1 (MQ=255) ttGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGATGAACCCGCGAAGAGGTCAGTTCTAACAATATAGATC‑TATCAGACCGCCAt > 3:351032/1‑149 (MQ=255) cagcaACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCgg > 2:168877/1‑149 (MQ=255) cagcaACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCg < 5:277975/148‑1 (MQ=255) agcaACTGGAGCCAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGgc < 8:347155/149‑1 (MQ=255) gcaACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGgcg < 8:230935/149‑1 (MQ=255) cTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAg < 5:235986/109‑1 (MQ=255) cTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAg > 6:235986/1‑109 (MQ=255) ggAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCa > 2:393830/1‑149 (MQ=255) gagaCAAACGGGGCGCTATCGGTACCGGATACCGAACATTACCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCAt > 2:273055/1‑149 (MQ=255) aaaCGGGGCGGTATCGGTACCGGATTCCGATCATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGATCCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTGATGGgc > 6:252734/1‑148 (MQ=255) aaaCGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGgcg > 2:214779/1‑149 (MQ=255) aaaCGGGGCGGTATCGGTACCGGATACAGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTAGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGgcg > 6:25254/1‑149 (MQ=255) cGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCAt < 4:72012/149‑1 (MQ=255) gCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTg < 2:383930/149‑1 (MQ=255) gTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGcc > 4:247045/1‑149 (MQ=255) gTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGcc < 1:341765/149‑1 (MQ=255) tACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCt > 4:318886/1‑149 (MQ=255) ccGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTc < 1:393830/149‑1 (MQ=255) cGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGATGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTcc < 4:351032/149‑1 (MQ=255) ggATACCGAACATTCCCATGTGGGGCGGAGTC‑ACTGGCATTGAGCCAAAAGCTTCGCTGGTTAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTcca < 1:54821/149‑1 (MQ=255) ggATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGt > 8:109979/1‑134 (MQ=255) ggATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGt < 7:109979/134‑1 (MQ=255) gATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATa > 2:162601/1‑140 (MQ=255) gATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATa < 1:162601/140‑1 (MQ=255) ccGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccagc > 4:179720/1‑146 (MQ=255) cGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTccagccag > 7:85463/1‑148 (MQ=255) gAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGaa < 1:168877/149‑1 (MQ=255) gAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGa > 1:200682/1‑148 (MQ=255) gAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGa > 4:219734/1‑148 (MQ=255) aCATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAAt < 3:179720/149‑1 (MQ=255) ccATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTc < 2:362980/148‑1 (MQ=255) ccATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTc > 1:362980/1‑148 (MQ=255) ccATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTc < 3:318886/148‑1 (MQ=255) ccATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCg > 8:3189/1‑149 (MQ=255) cATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCgg > 5:372045/1‑149 (MQ=255) aCGTGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc < 8:305311/149‑1 (MQ=255) aCGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGCCCGCCATCGGCGCTGTCATCGGCGCATGGTGCGCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc > 8:150073/1‑149 (MQ=255) aCGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCGTAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc > 3:358714/1‑149 (MQ=255) aCGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGc > 4:288187/1‑149 (MQ=255) gCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACt > 1:336178/1‑149 (MQ=255) aGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTCCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGc < 1:80201/148‑1 (MQ=255) aaaaGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTTCGGCTCATa > 7:330116/1‑149 (MQ=255) aaGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACt > 7:207710/1‑149 (MQ=255) ctcTTCGCGGGTTCACCCGCGAAGCGGTCAGTTCTAACAATAGAGATCTTATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACt > 1:288679/3‑149 (MQ=255) ctcTTCGCGGGTTCACCCGCGAAGCGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACtt > 7:36288/3‑149 (MQ=255) ctcTTCGCGGGTTCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACtt > 2:80447/3‑149 (MQ=255) aGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTTCGGCTCATACtt < 8:330116/149‑1 (MQ=255) aGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACtt < 6:372045/149‑1 (MQ=255) aGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACtt < 2:129187/149‑1 (MQ=255) cTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGc < 1:273055/149‑1 (MQ=255) ttCGCGGGTTCACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGc > 5:49874/1‑148 (MQ=255) gcgGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGt < 7:150073/149‑1 (MQ=255) gggTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGttt < 3:247045/149‑1 (MQ=255) ggTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTc > 2:17958/1‑149 (MQ=255) ggTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTc < 5:25254/149‑1 (MQ=255) ggTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTc < 8:85463/149‑1 (MQ=255) gAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCgg > 2:137664/1‑148 (MQ=255) | AGCTGCGGCGGCGCTGCAACGCGCAGGGGAGTGAATGCGCGATCTTGCAGCAACTGGAGACAAACGGGGCGGTATCGGTACCGGATACCGAACATTCCCATGTGGGGCGGAGTC‑ACGGGCATTGAGCCAAAAGCTTCGCGGGTGAACCCGCGAAGAGGTCAGTTCTAACAATAGAGATC‑TATCAGACCGCCATCGGCGCTGTCATCGGCGCATGGTGCTCATAGCCTTCCAGCCAGAAATCACTCGGCTCAATCTTCTCCAGCCACTCCGGCTCATACTTGCCAGTTTCGG > NC_002947/5866553‑5866843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |