| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,016,880 | A→G | 7.4% | intergenic (‑196/+31) | PP_5728 ← / ← PP_5267 | rhs repeat‑associated core domain‑containing protein/cytochrome c5 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,016,880 | 0 | A | G | 7.4% | 266.8 / 9.1 | 95 | intergenic (‑196/+31) | PP_5728/PP_5267 | rhs repeat‑associated core domain‑containing protein/cytochrome c5 |
| Reads supporting (aligned to +/- strand): ref base A (42/45); new base G (3/4); total (46/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.74e-01 | |||||||||||
AGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATC > NC_002947/6016739‑6017027 | aGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAAcggcgg > 6:21543/1‑149 (MQ=255) aCTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCGTTGATGGCGGGct < 4:158106/149‑2 (MQ=255) ggTAAAAATGCTAGTTCTCATGGAATCAGGCTCACCGCGATTGGAGCTTCTGGAGACATCCATGGACATGCCTCTAGCGGGTTGGTTGCCTGTGCTGGACCATTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAGCGGCGGCCCTCa > 4:132596/1‑149 (MQ=255) gTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTc < 5:96778/147‑1 (MQ=255) gTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCa < 2:171837/148‑1 (MQ=255) tAAAAATGCTTGTTCTCTTGGAATCAGGCTCAGCCCGATTGGTGCTTTTGGAGACATCGATGGTCATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACGACAAAAACAA‑AGCCCGCCGTTGATGGCGGGctttgt < 6:101467/148‑6 (MQ=255) aaaaTGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCGTTGATGGCGGGc > 4:125913/1‑141 (MQ=255) aaaaTGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCGTTGATGGCGGGc < 3:125913/141‑1 (MQ=255) aaaaTGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGc > 3:83076/1‑148 (MQ=255) aaaTGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCaa < 8:143495/149‑1 (MQ=255) aaaTGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCaa < 2:373750/149‑1 (MQ=255) aTGCTAGTTGTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAAtt < 3:228131/149‑1 (MQ=255) cTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAACAGCCCGCCATCAACGGCGGGCCTCATGCAATTCa < 1:252031/149‑1 (MQ=255) cTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAg > 3:90328/1‑149 (MQ=255) tAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGc > 2:379605/1‑149 (MQ=255) gTTCTCATGGAATCAGGCTCAGCCCTATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCt < 7:156926/148‑1 (MQ=255) cATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAAt > 5:38962/1‑149 (MQ=255) tccaaTCGGGCTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATca > 5:225465/4‑149 (MQ=255) tccaaTCGGGCTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCGGTAAAtaa > 5:111283/4‑147 (MQ=255) gAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac > 2:263845/1‑148 (MQ=255) gAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac < 8:102289/148‑1 (MQ=255) aaTCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACaa > 8:197459/1‑149 (MQ=255) aaTCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGCCGGGCCTCATGCAATTCAGCTGTAAATCACaa > 5:56464/1‑149 (MQ=255) ggCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCGTCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCg > 3:323656/1‑148 (MQ=255) ggCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGCGCCTCATGCAATTCAGCTGTAAATCACAACCCgg > 5:118101/1‑149 (MQ=255) gCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGa < 4:83076/149‑1 (MQ=255) gCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGa < 3:352134/149‑1 (MQ=255) ccagcaggAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTc < 1:333556/143‑1 (MQ=255) ccGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTc < 3:132596/149‑1 (MQ=255) ccGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTc < 2:277842/149‑1 (MQ=255) gAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATc < 2:276314/148‑1 (MQ=255) gAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCCTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATc < 3:165631/148‑1 (MQ=255) cTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAACCAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGccc < 2:373553/149‑1 (MQ=255) gagaCATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCAAGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑ttt > 7:340560/1‑147 (MQ=255) cATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTc < 1:379605/149‑1 (MQ=255) cATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTc < 6:56464/148‑1 (MQ=255) tGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATc < 5:38933/149‑1 (MQ=255) tGGACAGGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTATCGGGCAACACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGGAATTCAGCTGTAAATCACAACCCGGTCATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATc < 4:151469/149‑1 (MQ=255) gACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTc > 5:261797/1‑144 (MQ=255) gACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTc < 6:261797/144‑1 (MQ=255) aCATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTg < 2:386623/123‑1 (MQ=255) aCATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTg > 1:386623/1‑123 (MQ=255) cATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGa < 5:238438/148‑1 (MQ=255) tGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCa < 7:318470/149‑1 (MQ=255) tctAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCa > 3:293118/1‑137 (MQ=255) tctAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCa < 4:293118/137‑1 (MQ=255) tctAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCt > 3:80985/1‑149 (MQ=255) tAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTg > 8:71634/1‑148 (MQ=255) gCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTg < 1:376223/146‑1 (MQ=255) gCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGca > 1:179355/1‑148 (MQ=255) gggTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAg < 6:118101/149‑1 (MQ=255) gggTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAg > 6:362193/1‑149 (MQ=255) gttggttgCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGt > 5:30931/1‑149 (MQ=255) ttgCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCt > 2:135600/1‑149 (MQ=255) gCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCttt > 5:221634/1‑149 (MQ=255) gCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCtt < 7:197459/148‑1 (MQ=255) cccTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATAAACGGCGGGCCTCATGCAATAAAGCTGTAAATCACAAACCGGACAATTTCTTGATCGCCCC‑TTTAAGGTCATCATCCGAGAAATCTGCACAGCTGCCCttt > 2:305106/2‑149 (MQ=255) cTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTgg > 7:213651/1‑149 (MQ=255) cTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTgg < 8:213651/149‑1 (MQ=255) cTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTgg < 5:362193/149‑1 (MQ=255) tgtgCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTggc > 1:241912/1‑149 (MQ=255) tgtgCTGGACCTATCTCGGGCACAACAAAAACAA‑AGCCCGCCAACAACGGCGGGCCACATGCAATTCAGCTGTAAACCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTATGCACAGGTGCCCTTTggc > 2:301868/1‑149 (MQ=255) gACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGGACAg < 5:289868/130‑1 (MQ=255) gACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAg > 6:289868/1‑130 (MQ=255) cTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGt < 6:30931/149‑1 (MQ=255) ctcGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGa < 1:263845/148‑1 (MQ=255) ctcGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGa > 4:382416/1‑148 (MQ=255) gggCACCACAAAAACAA‑AGCCCGCCGTCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGAt < 4:323656/146‑1 (MQ=255) gggCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATa < 4:90328/147‑1 (MQ=255) gggCAACAAAAAAACAA‑ATCCCGGCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCCATTCCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATAc < 1:305106/149‑1 (MQ=255) gCACCACAAAAACAA‑AGCCCGCCATCAACGTCGGGCCTCATGCAATTCAGCTGTAAACCACAACCCGGACATTCTCTTGATCGACCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCTCAGGTGCCCTTTGGCGGCATGGCGTTGATACCAg < 1:301868/149‑1 (MQ=255) cacaAAAACAA‑AGCCCGCCATCCACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAAt > 6:357357/1‑149 (MQ=255) acaAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGa > 8:182646/1‑138 (MQ=255) acaAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGa < 7:182646/138‑1 (MQ=255) acaAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATg < 3:361587/149‑1 (MQ=255) aaaaCAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGcc > 8:79416/1‑149 (MQ=255) aaaaCAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGcc > 2:126778/1‑149 (MQ=255) aaCAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCACTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCtt > 7:234670/1‑149 (MQ=255) catgaggCCCGCCGTTGATGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCtt > 4:202365/7‑149 (MQ=255) cAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTgg > 4:93123/1‑149 (MQ=255) tgaggCCCGCCGTTGATGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGCGCCCTTTGGCGGCATGGCGTTGATAc > 1:377226/5‑134 (MQ=255) tgaggCCCGCCGTTGATGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGCGCCCTTTGGCGGCATGGCGTTGATAc < 2:377226/130‑1 (MQ=255) ga‑aGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGc > 6:316417/2‑149 (MQ=255) aa‑aGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCAt < 4:90853/88‑1 (MQ=255) aa‑aGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCAt > 3:90853/1‑88 (MQ=255) aa‑aGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGc < 7:71634/149‑1 (MQ=255) aGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGAAACCCCC‑TTTAAGGTATTGATACGATCAGTCAGCACAAGTGCCCATTGGCGGCATGGCGTTGGTAACAGTAATGGCCTTGGc > 1:314181/1‑147 (MQ=255) ccGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGa > 3:343686/1‑149 (MQ=255) cGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGAt < 4:343686/149‑1 (MQ=255) cGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGAt < 4:80985/149‑1 (MQ=255) ccATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCG‑TTTCAGGTCTTCATCCGAGCAGGCTGCACAGGTGCCCTTTGGCGGCTTGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGc < 8:340560/149‑1 (MQ=255) cATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGc > 3:174849/1‑148 (MQ=255) aTCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCa > 3:222877/1‑149 (MQ=255) cAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGGTACCAGTAATGGCCt > 1:233690/1‑133 (MQ=255) cAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGGTACCAGTAATGGCCt < 2:233690/133‑1 (MQ=255) aaCGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATc < 5:21543/148‑1 (MQ=255) | AGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAA‑AGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCTTGATCGCCCC‑TTTCAGGTCTTCATCCGAGCAGTCTGCACAGGTGCCCTTTGGCGGCATGGCGTTGATACCAGTAATGGCCTTGGCCAGGATGCCATC > NC_002947/6016739‑6017027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |