| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,104,053 | T→A | 8.2% | intergenic (+31/‑83) | PP_5353 → / → PP_5354 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,104,053 | 0 | T | A | 8.2% | 271.6 / 11.7 | 97 | intergenic (+31/‑83) | PP_5353/PP_5354 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (45/44); new base A (3/5); total (48/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.15e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.05e-02 | |||||||||||
TCGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAG > NC_002947/6103909‑6104195 | tCGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGcc > 6:337795/1‑149 (MQ=255) cGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGccc > 6:86721/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 4:192204/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 2:2985/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 1:389716/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 7:143396/1‑149 (MQ=255) gaagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACAAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCg > 1:259425/1‑149 (MQ=255) aagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCgg > 3:8538/1‑149 (MQ=255) aagaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCgg > 2:277306/1‑149 (MQ=255) gaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCgggg < 1:134691/149‑1 (MQ=255) gaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCgggg < 1:277306/149‑1 (MQ=255) gaaTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCgggg < 1:162379/149‑1 (MQ=255) aTTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGtt < 4:105717/149‑1 (MQ=255) cgcgCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCAAGCCCGGGGttct < 2:96477/148‑3 (MQ=255) gcgcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttg < 7:98709/149‑1 (MQ=255) gcTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttgct > 6:306646/1‑149 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttgctttt < 3:192204/148‑1 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttgctttt < 4:46707/148‑1 (MQ=255) cGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttgctttt < 4:8538/148‑1 (MQ=255) gACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttgcttttgc < 5:142045/149‑1 (MQ=255) gACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTtt‑ttgcttttg < 8:195888/148‑1 (MQ=255) gAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTggg > 1:249082/1‑149 (MQ=255) gAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTggg > 4:199614/1‑149 (MQ=255) tCAGAGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGTTAGCCGGTATCAGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACACCGGGCTTGCCAGGGGTTT‑TTGCTTTTTACAAAGTGGGCTACTAg > 4:309855/1‑149 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAggg < 2:249082/149‑1 (MQ=255) aGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAgg < 7:16825/148‑1 (MQ=255) cGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTTATTGCTTTTGCCAAAGTGGGCTAGTAGGGt < 1:29584/149‑1 (MQ=255) cGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGCta > 8:274491/1‑149 (MQ=255) cTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAACCAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgc < 4:149523/149‑1 (MQ=255) cTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGTTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgc > 2:75408/1‑149 (MQ=255) tGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgcg > 3:148987/1‑149 (MQ=255) ggCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgcg > 4:62068/1‑148 (MQ=255) ggCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGgcg > 6:316734/1‑148 (MQ=255) gCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCa < 3:309855/149‑1 (MQ=255) ggctGGTTCTCGCCTTGGGCGCGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAgg < 7:57941/132‑1 (MQ=255) ggctGGTTCTCGCCTTGGGCGCGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAgg > 8:57941/4‑135 (MQ=255) acaTGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGc > 8:217661/1‑149 (MQ=255) ttCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGctacta > 1:157815/1‑127 (MQ=255) ttCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGTGTTGTc < 5:316734/149‑1 (MQ=255) gcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCggg < 8:123958/93‑1 (MQ=255) gcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCggg > 7:123958/1‑93 (MQ=255) gcCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTTGGCTACTAGGGTATAAGGCGCAGCGTTGTCATc > 8:312269/1‑147 (MQ=255) cccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAg < 8:347513/149‑1 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt < 7:368149/95‑1 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGttt > 8:368149/1‑95 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTc < 1:376839/142‑1 (MQ=255) ccAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTc > 2:376839/1‑142 (MQ=255) cAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGt < 7:217661/149‑1 (MQ=255) aGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAATCAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCa < 5:337795/149‑1 (MQ=255) ggCGAGAACCAGCCTTGGCTGGTAGCCGGTAGCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGATCCCCGGGCTTGCTCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCag < 5:277868/149‑1 (MQ=255) cGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCagag < 2:287694/149‑1 (MQ=255) gaACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAgg > 2:338708/1‑147 (MQ=255) gaACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGaa < 5:113554/149‑1 (MQ=255) ccAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGt > 3:69906/1‑148 (MQ=255) cAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAggg < 5:58754/110‑1 (MQ=255) cAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAggg > 6:58754/1‑110 (MQ=255) gCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAAc > 5:328754/1‑149 (MQ=255) ttGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGCTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGt > 3:42094/1‑149 (MQ=255) ggCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTg < 2:389716/148‑1 (MQ=255) gCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGTTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATTAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTgg < 1:75408/148‑1 (MQ=255) tGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTgg > 8:278106/1‑146 (MQ=255) gTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaagaa < 4:238088/149‑1 (MQ=255) gTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaagaa < 4:148987/149‑1 (MQ=255) gTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaaga < 3:62068/148‑1 (MQ=255) aGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGaagaag < 8:143396/148‑1 (MQ=255) gCCGGTATCCGTCAAAACAGCTAATCGCTGCTTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGt < 4:69906/148‑1 (MQ=255) gCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTg < 2:29590/149‑1 (MQ=255) cGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGAt < 1:2985/149‑1 (MQ=255) ggTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACAGAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc < 2:368207/149‑1 (MQ=255) ggTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc < 7:312269/149‑1 (MQ=255) ggTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc < 5:306646/149‑1 (MQ=255) ggTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATc < 2:41839/149‑1 (MQ=255) tCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGaac < 1:178603/149‑1 (MQ=255) aaaaCAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTcc < 5:86721/149‑1 (MQ=255) cTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGc > 2:338896/1‑149 (MQ=255) cTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCACAGCGTTGTCATCTAGGTCAGAGGAAGTAAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGc < 7:274491/149‑1 (MQ=255) aaTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAgg > 6:213217/1‑72 (MQ=255) aaTCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAgg < 5:213217/72‑1 (MQ=255) tCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACATCTCCGTGAAGCGaa < 7:278106/148‑1 (MQ=255) cTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAg > 7:131761/1‑149 (MQ=255) cGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGc < 4:387539/147‑1 (MQ=255) cGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCg < 3:199614/149‑1 (MQ=255) cTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTAc > 6:199247/1‑149 (MQ=255) aaaCACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCg > 3:353977/1‑149 (MQ=255) aaCACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCgg > 4:52397/1‑149 (MQ=255) acaGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGATCCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGc > 7:196617/1‑149 (MQ=255) caGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGcc > 3:323799/1‑149 (MQ=255) aGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAGCTCCGTGAAGCGAATGAGCCGGTACCGGTGccc > 2:45225/1‑149 (MQ=255) aaCCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCt > 1:330051/1‑149 (MQ=255) aaCCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAAAAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCt > 3:16546/1‑149 (MQ=255) aCCCCGGGCAAGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 3:348387/1‑149 (MQ=255) ccccGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGCAGCGAATGAGCCGGTACCGGTGCCCCTgg > 4:149176/1‑149 (MQ=255) ccccGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 1:367714/1‑148 (MQ=255) cccGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTg > 1:15116/1‑147 (MQ=255) ccGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaa < 6:291274/95‑1 (MQ=255) ccGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGgaa > 5:291274/1‑95 (MQ=255) ccGGGCAAGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCACTGGAg > 4:84819/1‑149 (MQ=255) | TCGAAGAATTCGCGCTTCGACCAGGGCGAAGTGTTCAGCGAAAGCTGGCACATGGTTCGCGCCCAAGGCGAGAACCAGCCTTGGCTGGTAGCCGGTATCCGTCAAAACAGCTAATCGCTGCGTGCTAAACACAGAACCCCGGGCTTGCCCGGGGTTT‑TTGCTTTTGCCAAAGTGGGCTACTAGGGTATAAGGCGCAGCGTTGTCATCTAGGTCAGAGGAAGTGAACCGTGGAAGAAGTGATCGAACAACTCCGTGAAGCGAATGAGCCGGTACCGGTGCCCCTGGAG > NC_002947/6103909‑6104195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |