Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 59,224 T→A 9.0% intergenic (‑40/+92) PP_0050 ← / ← PP_0051 hypothetical protein/sigma‑54 dependent transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_00294759,2240TA 9.0% 184.1 / 4.8 66intergenic (‑40/+92)PP_0050/PP_0051hypothetical protein/sigma‑54 dependent transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (28/32);  new base A (3/3);  total (31/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGCGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAA  >  NC_002947/59077‑59371
                                                                                                                                                   |                                                                                                                                                   
gTGCGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTat                                                                                                                                                     <  6:343851/148‑1 (MQ=255)
  gCGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTattga                                                                                                                                                  >  7:344287/1‑149 (MQ=255)
   cGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTattgat                                                                                                                                                 >  7:224771/1‑149 (MQ=255)
   cGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTattgat                                                                                                                                                 <  7:307445/149‑1 (MQ=255)
   cGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTattga                                                                                                                                                  <  3:176604/148‑1 (MQ=255)
    gATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGAATGAGCGCTGCGCAGATCACGGTTAGGGCTTTCTTCATTTTTATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTattgatt                                                                                                                                                <  4:170958/149‑1 (MQ=255)
      tGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGc                                                                                                                                              >  8:236321/1‑149 (MQ=255)
        ggCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGcc                                                                                                                                             <  4:129951/148‑1 (MQ=255)
         gccgccATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAg                                                                                                                                           <  6:73454/149‑1 (MQ=255)
          ccgccATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAgg                                                                                                                                          >  7:133281/1‑149 (MQ=255)
          ccgccATCATGCCGATCAGGCGAGCCCGGTTGCGCGAAGCTAGCCAGCGGTGTGCTGAACATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGATAATCGCCTGGCAAGTATTGATTGCCAgg                                                                                                                                          >  4:371463/1‑149 (MQ=255)
            gccATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTTCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAATCAATACTTGCCAgg                                                                                                                                          <  7:148717/147‑1 (MQ=255)
            gccATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAATCAATACTTGCCAgg                                                                                                                                          >  8:148717/1‑147 (MQ=255)
            gccATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGtt                                                                                                                                        >  4:250665/1‑149 (MQ=255)
              catcatGCCGATCAGGCGGGCCCGGTTGCTCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCg                                                                                                                                      <  6:253617/149‑1 (MQ=255)
                   tGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCACGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTaa                                                                                                                                 <  5:152335/149‑1 (MQ=255)
                     ccGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAAc                                                                                                                                <  5:252196/148‑1 (MQ=255)
                     ccGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACt                                                                                                                               <  2:249067/149‑1 (MQ=255)
                        aTCAGGCGGGCCCGGTTGCGCGAAGCTTGCGAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGAt                                                                                                                            <  5:91533/149‑1 (MQ=255)
                             gCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGAc                                                                                                                       <  4:244883/149‑1 (MQ=255)
                               gggCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCa                                                                                                                     >  6:31688/1‑149 (MQ=255)
                                  cccGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAATCAATACTTGCCAggcgatt                                                                                                                                     <  3:68576/130‑6 (MQ=255)
                                  cccGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAATCAATACTTGCCAggcgatt                                                                                                                                     >  4:68576/1‑125 (MQ=255)
                                     ggTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGAttt                                                                                                               >  4:66206/1‑149 (MQ=255)
                                          cgcgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTccc                                                                                                          <  7:236321/149‑1 (MQ=255)
                                           gcgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCt                                                                                                         >  7:280519/1‑149 (MQ=255)
                                           gcgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCt                                                                                                         >  4:16336/1‑149 (MQ=255)
                                           gcgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCt                                                                                                         >  4:249471/1‑149 (MQ=255)
                                           gcgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCt                                                                                                         >  2:348076/1‑149 (MQ=255)
                                           gcgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGCTTAACTGATCAGACCACGATTTTTCCCt                                                                                                         >  5:371223/1‑149 (MQ=255)
                                            cgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGAttttt                                                                                                             >  2:153293/1‑144 (MQ=255)
                                            cgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGAttttt                                                                                                             <  1:153293/144‑1 (MQ=255)
                                            cgAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCtt                                                                                                        <  3:249471/149‑1 (MQ=255)
                                             gAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGt                                                                                                                                    <  7:71229/120‑1 (MQ=255)
                                             gAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGt                                                                                                                                    >  8:71229/1‑120 (MQ=255)
                                             gAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTcc                                                                                                           >  4:3130/1‑145 (MQ=255)
                                             gAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTcc                                                                                                           <  3:3130/145‑1 (MQ=255)
                                             gAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCttt                                                                                                       <  8:224771/149‑1 (MQ=255)
                                                gCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCaa                                                                                                    <  7:1998/149‑1 (MQ=255)
                                                  ttGCCAGCGGTGTGCTGAGCATGAGCGCGGCGAAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGGTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATg                                                                                                  >  5:368053/1‑149 (MQ=255)
                                                    gCCAGGGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTTGGTCTTTCTTCATTTTGTTGCGGTCCTCTTCCTGTTAATCTCCTGGCAAGTATTGATTGCCAGGTTGGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGt                                                                                                 <  3:371463/148‑1 (MQ=255)
                                                       aGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCTGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAgg                                                                                             <  8:321880/149‑1 (MQ=255)
                                                       aGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAgg                                                                                             <  8:344287/149‑1 (MQ=255)
                                                           gtgtGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGgcgc                                                                                         <  1:348076/149‑1 (MQ=255)
                                                              tgCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAgg                                                                                      >  5:74628/1‑149 (MQ=255)
                                                              tgCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAg                                                                                       <  3:250665/148‑1 (MQ=255)
                                                                   aGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTaa                                                                                   <  2:25938/147‑1 (MQ=255)
                                                                   aGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAg                                                                                 >  4:186867/1‑149 (MQ=255)
                                                                        gAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCg                                                                            >  4:280522/1‑149 (MQ=255)
                                                                         aGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCg                                                                            <  2:323183/148‑1 (MQ=255)
                                                                         aGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGCTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCg                                                                            <  6:371223/148‑1 (MQ=255)
                                                                          gcgcGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAATCAATACTTGCCAgg                                                                                                                                          >  3:353563/1‑85 (MQ=38)
                                                                          gcgcGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAATCAATACTTGCCAgg                                                                                                                                          <  4:353563/85‑1 (MQ=38)
                                                                                  cAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTg                                                                  <  8:280519/149‑1 (MQ=255)
                                                                                         cGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAgg                                                                                      >  8:137043/1‑122 (MQ=255)
                                                                                                ggCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTttcagt                                                     >  5:156786/1‑148 (MQ=255)
                                                                                                  cTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCATGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTttcagttca                                                  <  3:66206/149‑1 (MQ=255)
                                                                                                        tcATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTc                                                                                                            <  2:330245/85‑1 (MQ=255)
                                                                                                          aTTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTc                                                                              >  4:279509/1‑113 (MQ=255)
                                                                                                          aTTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTc                                                                              <  3:279509/113‑1 (MQ=255)
                                                                                                              tGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCt                                       <  3:186867/148‑1 (MQ=255)
                                                                                                                    ggTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAAAGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAgc                                <  2:82633/149‑1 (MQ=255)
                                                                                                                        ctctGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAgcggc                             <  3:280522/148‑1 (MQ=255)
                                                                                                                             ccTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATa                         <  6:156786/147‑1 (MQ=255)
                                                                                                                                gTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAgcg                    >  5:175593/1‑149 (MQ=255)
                                                                                                                                gTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAgcg                    >  7:356024/1‑149 (MQ=255)
                                                                                                                                    aTCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAgcgtgcg                >  4:67975/1‑149 (MQ=255)
                                                                                                                                        ccTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCCATACAGCGTGCGTTCa            >  5:289882/1‑149 (MQ=255)
                                                                                                                                         cTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCAc           <  3:16336/149‑1 (MQ=255)
                                                                                                                                           ggCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACt          >  5:79964/1‑148 (MQ=255)
                                                                                                                                             cAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTGTGGGGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCAt       >  8:104849/1‑149 (MQ=255)
                                                                                                                                                gTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTATGGCGTTCTTTCAGTTCAGCCAGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGc     >  5:133472/1‑148 (MQ=255)
                                                                                                                                                  attgattgCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGcc    >  7:87796/1‑147 (MQ=255)
                                                                                                                                                   ttgattgCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCaa  <  8:87796/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GTGCGATGGGCCGCCATCATGCCGATCAGGCGGGCCCGGTTGCGCGAAGCTTGCCAGCGGTGTGCTGAGCATGAGCGCGGCGCAGATCACGGTTAGGGCTTTCTTCATTTTGATGCGGTCCTCTGCCTGTTAATCGCCTGGCAAGTATTGATTGCCAGGTTCGGTTAACTGATCAGACCACGATTTTTCCCTTTCAATGTCAGGGCGCAGGTAAAGGTCCGGTAAAGTCTGGCGTTCTTTCAGTTCAGCCCGAGCGCTTTCAAGCGGCGATACAGCGTGCGTTCACTCATGCCAA  >  NC_002947/59077‑59371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: